Variant report

Variant	rs4908941
Chromosome Location	chr3:17821483-17821484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17820757..17821702-chr3:17882495..17883376,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10428172	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10428260	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10510477	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128837	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128839	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128841	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128855	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128857	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11128858	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709941	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921152	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12492504	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12497320	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13065637	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13076950	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13085167	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13097908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17200979	0.93[CEU][hapmap]
rs17273111	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs2033378	0.93[CEU][hapmap]
rs2033379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs2337387	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34146452	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128509	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4243833	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4243835	1.00[JPT][hapmap]
rs4243836	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4243838	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4260468	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4404476	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4422341	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4435674	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4482690	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4484221	1.00[CHB][hapmap]
rs4487265	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4513482	1.00[JPT][hapmap]
rs4566567	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4566568	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4568172	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4602424	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4616675	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4632574	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4908939	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4908940	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4908976	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4908987	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4909012	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5014632	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs59650576	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6577596	1.00[ASN][1000 genomes]
rs6577597	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6577616	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6577619	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6577622	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6577643	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6577644	1.00[CHB][hapmap]
rs6768637	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6792422	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6795189	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6809062	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6810235	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7427588	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7428585	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7632240	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7642860	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652156	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8179983	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs919562	0.80[EUR][1000 genomes]
rs9681232	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9821955	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9853571	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9855515	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9857910	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9869999	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9985472	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17816400-17823000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:17819600-17821800	Enhancers	Dnd41	blood
3	chr3:17820800-17821800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:17820800-17822200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr3:17821000-17822200	Enhancers	Primary B cells from peripheral blood	blood
6	chr3:17821000-17822800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:17821200-17821600	Enhancers	Primary B cells from cord blood	blood
8	chr3:17821200-17822200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:17821400-17821600	Enhancers	GM12878-XiMat	blood
10	chr3:17821400-17821800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
11	chr3:17821400-17821800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr3:17821400-17822200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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