Variant report
| Variant | rs6577596 |
|---|---|
| Chromosome Location | chr3:17832829-17832830 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:17782277..17785273-chr3:17831066..17833109,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000131374 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10428172 | 1.00[ASN][1000 genomes] |
| rs11128855 | 1.00[ASN][1000 genomes] |
| rs11128858 | 1.00[ASN][1000 genomes] |
| rs11709941 | 1.00[ASN][1000 genomes] |
| rs11921152 | 1.00[ASN][1000 genomes] |
| rs34146452 | 1.00[ASN][1000 genomes] |
| rs4404476 | 0.87[ASN][1000 genomes] |
| rs4487265 | 1.00[ASN][1000 genomes] |
| rs4616675 | 1.00[ASN][1000 genomes] |
| rs4908941 | 1.00[ASN][1000 genomes] |
| rs7642860 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999594 | chr3:17690416-17982318 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
