Variant report

Variant	rs4330281
Chromosome Location	chr3:17859366-17859367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1004307	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11128871	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12495352	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13062642	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13071301	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1430896	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430904	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1469558	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17200916	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17200979	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs17273111	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033373	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2033374	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033376	0.80[AMR][1000 genomes]
rs2033377	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033378	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2033379	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2337387	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28796017	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243834	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4450852	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908942	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4908978	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908979	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908981	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4908982	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4908984	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4908985	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908986	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908988	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6577597	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577598	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6771673	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6780932	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6787380	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6794859	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6802932	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6804677	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7632834	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633898	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs919562	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9862290	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Schizophrenia	25056061	GWAS catalog

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17851400-17861000	Weak transcription	Right Atrium	heart
2	chr3:17855800-17860600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:17859000-17860200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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