Variant report

Variant	rs2033376
Chromosome Location	chr3:17858111-17858112
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13062642	0.85[AMR][1000 genomes]
rs1430896	0.85[AMR][1000 genomes]
rs17273111	0.85[AMR][1000 genomes]
rs2033373	0.84[AMR][1000 genomes]
rs2033374	0.84[AMR][1000 genomes]
rs2033377	0.85[AMR][1000 genomes]
rs2033379	0.84[AMR][1000 genomes]
rs2337387	0.82[AMR][1000 genomes]
rs28796017	0.85[AMR][1000 genomes]
rs4330281	0.80[AMR][1000 genomes]
rs4450852	0.84[AMR][1000 genomes]
rs4908942	0.84[AMR][1000 genomes]
rs4908978	0.85[AMR][1000 genomes]
rs4908979	0.84[AMR][1000 genomes]
rs4908981	0.82[AMR][1000 genomes]
rs4908982	0.85[AMR][1000 genomes]
rs4908985	0.84[AMR][1000 genomes]
rs4908986	0.85[AMR][1000 genomes]
rs6577597	0.82[AMR][1000 genomes]
rs6771673	0.82[AMR][1000 genomes]
rs6780932	0.82[AMR][1000 genomes]
rs6787380	0.85[AMR][1000 genomes]
rs6804677	0.84[AMR][1000 genomes]
rs7633898	0.84[AMR][1000 genomes]
rs919562	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17851400-17861000	Weak transcription	Right Atrium	heart
2	chr3:17855800-17860600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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