Variant report

Variant	rs13062642
Chromosome Location	chr3:17856113-17856114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17850144..17852837-chr3:17855131..17856692,2	K562	blood:
2	chr3:17783244..17785657-chr3:17853959..17856345,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131374	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1004307	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11128871	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12495352	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13071301	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1430896	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430904	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1469558	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17200916	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17200979	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17273111	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033373	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2033374	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033376	0.85[AMR][1000 genomes]
rs2033377	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033378	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2033379	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2337387	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28796017	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243834	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4330281	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4450852	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4487265	0.80[EUR][1000 genomes]
rs4616675	0.80[EUR][1000 genomes]
rs4908942	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4908978	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908979	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908981	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4908982	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4908984	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4908985	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908986	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908988	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6577597	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577598	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6771673	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6780932	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6787380	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6794859	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6802932	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6804677	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7632834	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633898	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs919562	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9862290	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17851400-17861000	Weak transcription	Right Atrium	heart
2	chr3:17855800-17860600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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