Variant report

Variant	rs11914537
Chromosome Location	chr3:17686841-17686842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:17685317..17686887-chr3:17783169..17785633,3	MCF-7	breast:
2	chr3:17686325..17687848-chr3:17882370..17883316,8	K562	blood:
3	chr3:17686323..17687041-chr3:17852128..17852662,2	MCF-7	breast:
4	chr3:17675340..17678330-chr3:17685687..17687246,2	K562	blood:
5	chr3:17682592..17685089-chr3:17685251..17686866,2	K562	blood:
6	chr3:17681918..17684024-chr3:17685231..17687253,2	MCF-7	breast:
7	chr3:17685895..17687359-chr3:17882432..17883403,5	MCF-7	breast:
8	chr3:17686300..17687006-chr3:17728236..17728848,2	MCF-7	breast:
9	chr3:17686538..17687204-chr7:20296816..20297526,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000131374	Chromatin interaction

Extended variants
information (count: 292 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:287)

rs_ID	r²[population]
rs11128829	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128830	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128831	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128833	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128836	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11128838	0.85[CHB][hapmap]
rs11128849	0.85[CHB][hapmap]
rs11128850	0.85[CHB][hapmap]
rs11914797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915019	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11916424	1.00[ASW][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap]
rs11918295	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11920557	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11920751	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921699	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922177	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11922534	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922536	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922861	0.87[AMR][1000 genomes]
rs11923589	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924970	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11925066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs11925353	0.87[AMR][1000 genomes]
rs11926072	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11926087	0.89[YRI][hapmap]
rs11926251	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11927283	0.87[AMR][1000 genomes]
rs11927436	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs11927654	0.85[CHB][hapmap]
rs11927769	1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs11927967	0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11928397	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12106762	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106770	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12108135	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12152509	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12185952	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374023	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs13076724	0.85[CHB][hapmap]
rs13320647	0.85[CHB][hapmap]
rs1374199	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446302	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043618	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043623	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043631	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043643	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043652	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043909	1.00[MEX][hapmap]
rs17044053	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs17044072	1.00[CHB][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs17200881	0.95[EUR][1000 genomes]
rs17273048	0.95[EUR][1000 genomes]
rs17273076	1.00[CEU][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.95[EUR][1000 genomes]
rs1823099	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2033378	0.85[CHB][hapmap]
rs28456004	0.84[EUR][1000 genomes]
rs28525383	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2881803	0.85[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35302807	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935701	0.86[EUR][1000 genomes]
rs4260468	0.85[CHB][hapmap]
rs4377510	0.85[CHB][hapmap]
rs4611850	0.85[CHB][hapmap]
rs4627740	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4637311	1.00[JPT][hapmap]
rs4908965	0.85[CHB][hapmap]
rs4908967	0.85[CHB][hapmap]
rs56746012	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56757867	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56824662	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56950773	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57087795	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57153645	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57161733	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57201363	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57344515	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57352109	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57427954	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57487616	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57816103	0.84[EUR][1000 genomes]
rs57825001	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57904270	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58003185	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58152540	0.87[AMR][1000 genomes]
rs58233162	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58392667	0.87[AMR][1000 genomes]
rs58473554	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58475382	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58595628	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58617436	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58653570	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58790051	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58848058	0.87[AMR][1000 genomes]
rs58856794	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59394144	1.00[EUR][1000 genomes]
rs59460836	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59582994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59891221	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59960076	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60019424	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60066286	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60140283	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60158152	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60459720	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60580179	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60909298	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60940413	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60964146	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60993983	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61057228	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61284353	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61698855	0.81[AFR][1000 genomes]
rs6577629	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6766514	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767839	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6778109	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6780076	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782575	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6786472	0.84[EUR][1000 genomes]
rs6788957	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792589	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795454	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803999	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804323	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6807020	0.85[CHB][hapmap]
rs6809000	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153017	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153018	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153020	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153024	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153026	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153027	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153029	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153034	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153038	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153039	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153042	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153047	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153048	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153050	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153051	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153052	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153055	1.00[ASN][1000 genomes]
rs73153057	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153058	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153059	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153061	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153063	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153064	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153068	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153069	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153070	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153071	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153072	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153073	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153074	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153075	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153079	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153086	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153089	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153093	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153096	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153102	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155203	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155205	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155206	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155208	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155209	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155211	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155212	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155213	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155214	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155215	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155225	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155226	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160923	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160929	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160937	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160943	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73160950	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160951	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160957	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160959	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73160964	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73160967	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161403	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161408	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161409	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161412	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161414	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161417	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161422	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161425	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161441	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161446	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161453	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161465	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161470	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161472	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161481	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161483	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161486	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161488	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161491	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161492	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161493	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161500	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161502	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73164768	0.87[AMR][1000 genomes]
rs73164787	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73164796	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165722	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165725	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165729	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165734	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165735	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165736	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165740	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165743	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165752	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165764	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165771	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165774	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165775	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165777	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165779	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165792	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165798	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73167503	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73167510	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73167514	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73167523	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73167527	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73170844	0.87[AMR][1000 genomes]
rs73170845	0.87[AMR][1000 genomes]
rs73170858	0.87[AMR][1000 genomes]
rs73170877	0.87[AMR][1000 genomes]
rs73170878	0.87[AMR][1000 genomes]
rs7427235	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427885	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7427909	0.95[EUR][1000 genomes]
rs7427937	0.95[EUR][1000 genomes]
rs7432241	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7612938	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7618531	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7618836	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7619879	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7620585	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7627732	0.85[CHB][hapmap]
rs7628126	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630381	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7634642	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7648122	0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7650295	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651998	0.85[CHB][hapmap]
rs8179891	0.85[CHB][hapmap]
rs9310519	0.85[CHB][hapmap]
rs9310520	0.85[CHB][hapmap]
rs9310526	0.85[CHB][hapmap]
rs9310528	0.85[CHB][hapmap]
rs9681628	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9681747	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9713431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9754654	0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9754657	0.86[YRI][hapmap];0.87[AMR][1000 genomes]
rs9757339	0.85[CHB][hapmap]
rs9821318	0.85[CHB][hapmap]
rs9823064	0.85[CHB][hapmap]
rs9823767	0.85[CHB][hapmap]
rs9839588	0.82[CHB][hapmap]
rs9847477	0.82[CHB][hapmap]
rs9851302	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9876715	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878954	0.85[CHB][hapmap]
rs9941993	0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9968236	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1849856	chr3:17646794-17748688	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17664800-17688600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:17664800-17689000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr3:17668800-17706200	Weak transcription	Primary B cells from cord blood	blood
4	chr3:17674000-17690800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:17674200-17687600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:17681400-17689800	Weak transcription	Primary T cells from cord blood	blood
7	chr3:17681600-17687000	Weak transcription	Brain Angular Gyrus	brain
8	chr3:17681600-17687000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr3:17681800-17714400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:17684000-17687000	Enhancers	HSMM	muscle
11	chr3:17684600-17687000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:17684600-17687200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr3:17684800-17687000	Enhancers	Osteobl	bone
14	chr3:17685400-17687000	Weak transcription	Brain Substantia Nigra	brain
15	chr3:17685800-17687000	Weak transcription	Brain Anterior Caudate	brain
16	chr3:17686400-17687000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr3:17686400-17687000	Enhancers	Liver	Liver
18	chr3:17686600-17687400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:17686800-17687000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:17686800-17687000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:17686800-17687000	Enhancers	Brain Germinal Matrix	brain
22	chr3:17686800-17687000	Enhancers	Fetal Lung	lung
23	chr3:17686800-17687000	Enhancers	Small Intestine	intestine
24	chr3:17686800-17687000	Enhancers	HSMMtube	muscle
25	chr3:17686800-17687200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:17686800-17687200	Enhancers	NHEK	skin
27	chr3:17686800-17687400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr3:17686800-17687400	Enhancers	A549	lung
29	chr3:17686800-17687800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links