Variant report

Variant	rs73160940
Chromosome Location	chr3:17586506-17586507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17586014..17586766-chr3:17882448..17883200,2	MCF-7	breast:
2	chr3:17585835..17588259-chr3:17590207..17593064,3	K562	blood:
3	chr3:17585640..17587263-chr3:17782584..17784641,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131374	Chromatin interaction

Extended variants
information (count: 372 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:361)

rs_ID	r²[population]
rs10446414	0.89[EUR][1000 genomes]
rs10446443	0.89[EUR][1000 genomes]
rs10446444	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10446445	0.89[EUR][1000 genomes]
rs10510473	1.00[EUR][1000 genomes]
rs10510474	1.00[EUR][1000 genomes]
rs11128829	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128830	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128831	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128833	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11914537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11914797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915019	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915044	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915588	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11916205	0.89[EUR][1000 genomes]
rs11917482	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11918295	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11918387	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11920557	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11920751	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921357	0.89[EUR][1000 genomes]
rs11921699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922177	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11922534	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922536	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922699	0.95[EUR][1000 genomes]
rs11922701	1.00[EUR][1000 genomes]
rs11922854	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922861	0.87[AMR][1000 genomes]
rs11923589	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923635	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924920	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11924970	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11925353	0.87[AMR][1000 genomes]
rs11925427	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11926072	0.87[AMR][1000 genomes]
rs11926251	0.87[AMR][1000 genomes]
rs11927283	0.87[AMR][1000 genomes]
rs11927769	0.87[AMR][1000 genomes]
rs11927967	0.87[AMR][1000 genomes]
rs11928397	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11929394	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106762	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106770	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12108135	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12152509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12185952	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374023	0.95[EUR][1000 genomes]
rs1374199	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446301	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446302	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1596863	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17029249	1.00[EUR][1000 genomes]
rs17043392	0.89[EUR][1000 genomes]
rs17043425	0.89[EUR][1000 genomes]
rs17043427	0.89[EUR][1000 genomes]
rs17043439	0.89[EUR][1000 genomes]
rs17043444	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17043453	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17043460	0.89[EUR][1000 genomes]
rs17043463	0.89[EUR][1000 genomes]
rs17043467	0.89[EUR][1000 genomes]
rs17043486	0.84[EUR][1000 genomes]
rs17043499	1.00[EUR][1000 genomes]
rs17043506	1.00[EUR][1000 genomes]
rs17043514	1.00[EUR][1000 genomes]
rs17043518	1.00[EUR][1000 genomes]
rs17043556	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043565	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043571	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043578	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043585	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043589	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043618	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043623	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043631	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043643	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043652	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17200881	0.95[EUR][1000 genomes]
rs17272978	0.84[EUR][1000 genomes]
rs17273048	0.95[EUR][1000 genomes]
rs17273076	0.95[EUR][1000 genomes]
rs1823099	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2028873	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2348363	0.81[ASN][1000 genomes]
rs2348364	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28525383	0.87[AMR][1000 genomes]
rs2881803	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34073532	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35302807	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935701	0.86[EUR][1000 genomes]
rs4627740	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56660137	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56746012	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56757867	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56824662	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56950773	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57087795	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57153645	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57161733	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57201363	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57213690	0.89[EUR][1000 genomes]
rs57344515	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57352109	0.87[AMR][1000 genomes]
rs57427954	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57487616	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57816103	0.84[EUR][1000 genomes]
rs57825001	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57904270	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58003185	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58035365	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58066441	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58152540	0.87[AMR][1000 genomes]
rs58233162	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58286882	1.00[EUR][1000 genomes]
rs58392667	0.87[AMR][1000 genomes]
rs58473554	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58475382	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58595628	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58617436	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58653570	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58790051	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58848058	0.87[AMR][1000 genomes]
rs58856794	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59394144	1.00[EUR][1000 genomes]
rs59460836	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59582994	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59714365	1.00[EUR][1000 genomes]
rs59891221	0.87[AMR][1000 genomes]
rs59960076	0.87[AMR][1000 genomes]
rs60019424	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60066286	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60140283	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60158152	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60303234	1.00[EUR][1000 genomes]
rs60459720	0.87[AMR][1000 genomes]
rs60580179	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60909298	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60940413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60964146	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60993983	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61057228	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61284353	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61626295	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577629	0.87[AMR][1000 genomes]
rs6766514	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767839	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6768716	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6773442	0.89[EUR][1000 genomes]
rs6778109	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6780076	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782575	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6784697	0.89[EUR][1000 genomes]
rs6788957	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792589	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795454	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803999	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804323	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6808999	0.89[EUR][1000 genomes]
rs6809000	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145808	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73145809	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73145814	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73145818	0.89[EUR][1000 genomes]
rs73145819	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73145823	0.89[EUR][1000 genomes]
rs73145825	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73145827	0.89[EUR][1000 genomes]
rs73145829	0.89[EUR][1000 genomes]
rs73145846	0.89[EUR][1000 genomes]
rs73145856	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73145860	0.89[EUR][1000 genomes]
rs73145862	0.89[EUR][1000 genomes]
rs73145864	0.89[EUR][1000 genomes]
rs73145867	0.89[EUR][1000 genomes]
rs73145877	0.89[EUR][1000 genomes]
rs73145883	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73145887	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73145894	1.00[EUR][1000 genomes]
rs73145896	1.00[EUR][1000 genomes]
rs73145900	1.00[EUR][1000 genomes]
rs73147810	0.90[EUR][1000 genomes]
rs73153017	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153018	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153020	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153024	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153026	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153027	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153029	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153034	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153038	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153039	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153042	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153047	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153048	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153050	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153051	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153052	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153055	1.00[ASN][1000 genomes]
rs73153057	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153058	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153059	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153061	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153063	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153064	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153068	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153069	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153070	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153071	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153072	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153073	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153074	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153075	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153079	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153086	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153089	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153093	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153096	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153102	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154801	1.00[EUR][1000 genomes]
rs73155203	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155205	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155206	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155208	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155209	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155211	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155212	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155213	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155214	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155215	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155225	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155226	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156310	1.00[EUR][1000 genomes]
rs73156314	1.00[EUR][1000 genomes]
rs73156319	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73156329	1.00[EUR][1000 genomes]
rs73156333	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73156342	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73156346	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73156350	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73156352	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73156353	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73156355	1.00[EUR][1000 genomes]
rs73156356	1.00[EUR][1000 genomes]
rs73156363	1.00[EUR][1000 genomes]
rs73156367	1.00[EUR][1000 genomes]
rs73156369	1.00[EUR][1000 genomes]
rs73156372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156373	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156374	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156378	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156383	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156390	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156395	1.00[EUR][1000 genomes]
rs73156397	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73158011	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160923	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160929	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160937	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160942	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73160950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160957	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160959	0.87[AMR][1000 genomes]
rs73160964	0.87[AMR][1000 genomes]
rs73160967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161403	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161408	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161409	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161412	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161414	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161417	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161422	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161425	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161441	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161446	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161453	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161465	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161470	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161472	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161481	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161483	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161486	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161488	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161491	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161492	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161493	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161500	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161502	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73164768	0.87[AMR][1000 genomes]
rs73164787	0.87[AMR][1000 genomes]
rs73164796	0.87[AMR][1000 genomes]
rs73165722	0.87[AMR][1000 genomes]
rs73165725	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165736	0.87[AMR][1000 genomes]
rs73165740	0.87[AMR][1000 genomes]
rs73165743	0.87[AMR][1000 genomes]
rs73165752	0.87[AMR][1000 genomes]
rs73165764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165771	0.87[AMR][1000 genomes]
rs73165774	0.87[AMR][1000 genomes]
rs73165775	0.87[AMR][1000 genomes]
rs73165777	0.87[AMR][1000 genomes]
rs73165779	0.87[AMR][1000 genomes]
rs73165792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165798	0.87[AMR][1000 genomes]
rs73167503	0.87[AMR][1000 genomes]
rs73167510	0.87[AMR][1000 genomes]
rs73167514	0.87[AMR][1000 genomes]
rs73167523	0.87[AMR][1000 genomes]
rs73167527	0.87[AMR][1000 genomes]
rs73170844	0.87[AMR][1000 genomes]
rs73170845	0.87[AMR][1000 genomes]
rs73170858	0.87[AMR][1000 genomes]
rs73170877	0.87[AMR][1000 genomes]
rs73170878	0.87[AMR][1000 genomes]
rs7427235	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427885	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7427909	0.95[EUR][1000 genomes]
rs7427937	0.95[EUR][1000 genomes]
rs7432241	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7612938	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7618531	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7618836	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7619879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7620585	0.87[AMR][1000 genomes]
rs7621906	0.81[EUR][1000 genomes]
rs7622831	0.89[EUR][1000 genomes]
rs7628126	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630381	0.87[AMR][1000 genomes]
rs7634642	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7648122	0.87[AMR][1000 genomes]
rs7650295	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs959774	0.89[EUR][1000 genomes]
rs9681628	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9681747	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9713431	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9754654	0.87[AMR][1000 genomes]
rs9754657	0.87[AMR][1000 genomes]
rs9851302	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9876715	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9941993	0.87[AMR][1000 genomes]
rs9968236	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv876593	chr3:17419843-17604963	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17530600-17587600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:17536600-17588000	Weak transcription	Left Ventricle	heart
3	chr3:17557600-17597200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:17561000-17599000	Weak transcription	Pancreas	Pancrea
5	chr3:17562000-17586800	Weak transcription	A549	lung
6	chr3:17563200-17593400	Weak transcription	Aorta	Aorta
7	chr3:17575000-17607600	Weak transcription	Dnd41	blood
8	chr3:17575000-17613400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr3:17577000-17586800	Weak transcription	Psoas Muscle	Psoas
10	chr3:17577000-17588800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:17577200-17587000	Weak transcription	Adipose Nuclei	Adipose
12	chr3:17577200-17593000	Weak transcription	Fetal Heart	heart
13	chr3:17580000-17619400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:17581200-17606200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr3:17581400-17587000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:17582000-17588400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr3:17583600-17586600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr3:17583800-17587000	Strong transcription	Primary B cells from cord blood	blood
19	chr3:17583800-17596800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:17584000-17587400	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr3:17584000-17613200	Weak transcription	GM12878-XiMat	blood
22	chr3:17584200-17599000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:17584200-17608600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr3:17584400-17587200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr3:17584400-17593600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr3:17584600-17587000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr3:17584800-17587400	Weak transcription	Liver	Liver
28	chr3:17586000-17587600	Weak transcription	Fetal Stomach	stomach
29	chr3:17586000-17594200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr3:17586200-17603000	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links