Variant report

Variant	rs73156319
Chromosome Location	chr3:17414490-17414491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr3:17414249-17415071	Hela-S3	cervix:	n/a	chr3:17414916-17414927 chr3:17414298-17414309
2	CEBPB	chr3:17414293-17414616	A549	lung:	n/a	chr3:17414298-17414309
3	FOXA2	chr3:17414173-17414589	A549	lung:	n/a	n/a
4	FOSL2	chr3:17414233-17414686	A549	lung:	n/a	n/a
5	CEBPB	chr3:17414275-17415060	IMR90	lung:	n/a	chr3:17414916-17414927 chr3:17414298-17414309
6	JUND	chr3:17414346-17414543	HepG2	liver:	n/a	n/a
7	JUND	chr3:17414309-17414587	HepG2	liver:	n/a	n/a
8	FOS	chr3:17414293-17414624	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr3:17414136-17414634	MCF10A-Er-Src	breast:	n/a	chr3:17414136-17414146 chr3:17414137-17414145
10	E2F4	chr3:17414073-17414561	MCF10A-Er-Src	breast:	n/a	n/a
11	SP1	chr3:17414245-17414631	A549	lung:	n/a	n/a
12	FOS	chr3:17414277-17414614	MCF10A-Er-Src	breast:	n/a	n/a
13	ARID3A	chr3:17414297-17414619	HepG2	liver:	n/a	n/a
14	FOSL2	chr3:17414278-17414548	HepG2	liver:	n/a	n/a
15	MAFK	chr3:17413895-17414506	IMR90	lung:	n/a	chr3:17414049-17414069 chr3:17414048-17414063 chr3:17414055-17414065 chr3:17414047-17414061
16	FOS	chr3:17414090-17414636	MCF10A-Er-Src	breast:	n/a	chr3:17414136-17414146 chr3:17414137-17414145
17	FOXA1	chr3:17414215-17414594	HepG2	liver:	n/a	n/a
18	FOSL2	chr3:17414359-17414539	HepG2	liver:	n/a	n/a
19	MAFK	chr3:17413930-17414544	HepG2	liver:	n/a	chr3:17414049-17414069 chr3:17414048-17414063 chr3:17414055-17414065 chr3:17414047-17414061
20	CEBPB	chr3:17414220-17414561	HepG2	liver:	n/a	chr3:17414298-17414309
21	EP300	chr3:17414268-17414716	Hela-S3	cervix:	n/a	n/a
22	CEBPB	chr3:17414392-17414523	HepG2	liver:	n/a	n/a
23	MAFK	chr3:17413951-17414583	Hela-S3	cervix:	n/a	chr3:17414049-17414069 chr3:17414048-17414063 chr3:17414055-17414065 chr3:17414047-17414061
24	FOXA1	chr3:17414167-17414646	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
TBC1D5	TF binding region

Extended variants
information (count: 329 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:314)

rs_ID	r²[population]
rs10446414	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10446443	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10446444	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10446445	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10510473	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10510474	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128821	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11128829	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11128830	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11128831	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11128833	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11914797	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11915019	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11915044	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11915588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11916205	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11917482	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11918295	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11918387	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11920557	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11920751	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11921244	0.95[EUR][1000 genomes]
rs11921357	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921699	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11922177	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922534	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11922536	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11922699	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922701	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922854	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11924717	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11924920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924970	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11925427	0.95[EUR][1000 genomes]
rs11928397	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11929394	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12106762	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12106770	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12108135	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12152509	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12185952	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1374199	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1446301	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1446302	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596863	0.86[EUR][1000 genomes]
rs17029242	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17029249	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043253	0.90[EUR][1000 genomes]
rs17043279	0.85[EUR][1000 genomes]
rs17043383	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043392	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17043425	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043427	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043439	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043444	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043453	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043460	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043463	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043467	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043486	1.00[ASN][1000 genomes]
rs17043499	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043506	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043514	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043518	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043556	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17043558	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17043565	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17043568	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17043571	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17043574	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17043578	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17043579	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17043585	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043589	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043618	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043623	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17043631	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17043643	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17043652	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17200781	1.00[ASN][1000 genomes]
rs17272978	1.00[ASN][1000 genomes]
rs17273048	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1823099	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028873	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348364	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2881803	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34073532	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35302807	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3935701	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4627740	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56660137	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56746012	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56757867	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56824662	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56950773	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57087795	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57153645	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57161733	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57201363	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57213690	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57344515	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57427954	0.95[EUR][1000 genomes]
rs57487616	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57825001	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57904270	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58003185	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58035365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58066441	0.95[EUR][1000 genomes]
rs58233162	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58286882	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58473554	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58475382	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58595628	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58617436	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58653570	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58790051	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58856794	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59394144	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59460836	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59582994	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59714365	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60019424	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60066286	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60140283	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60158152	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60303234	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60580179	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60909298	0.95[EUR][1000 genomes]
rs60964146	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60993983	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61057228	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61186520	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61284353	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61626295	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6766514	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6767839	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768716	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773442	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778109	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780076	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6782575	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6784697	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788957	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6790367	0.90[EUR][1000 genomes]
rs6792589	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6792747	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6794164	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6795454	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6803999	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6804323	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6808999	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809000	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73143799	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73145808	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145809	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145814	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145818	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145819	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145823	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145825	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145827	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145829	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145846	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145856	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145860	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145862	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145864	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145867	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145877	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145894	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145896	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145900	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73147810	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153017	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153018	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153020	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153024	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153026	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153027	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153028	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153029	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153034	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153038	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153039	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153042	0.95[EUR][1000 genomes]
rs73153047	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153048	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153050	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153051	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153052	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153055	0.81[AMR][1000 genomes]
rs73153057	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153058	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153059	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153061	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153063	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153064	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153068	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153069	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153070	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153071	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153072	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153073	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153074	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153075	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153079	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153086	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153089	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153093	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153096	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73153102	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73154801	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155203	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73155205	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73155206	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73155208	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155209	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73155211	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73155212	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73155213	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73155214	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73155215	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73155225	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73155226	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73156310	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156313	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73156314	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156329	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156346	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156350	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156352	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156355	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156356	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156363	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156367	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156369	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156372	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73156373	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73156374	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73156378	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73156383	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73156387	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73156390	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73156391	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73156395	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73158011	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73160923	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73160929	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73160937	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73160940	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73160942	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73160943	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73160950	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73160951	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73160957	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73160967	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161403	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161408	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73161409	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73161412	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73161414	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73161417	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73161422	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73161425	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161441	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73161446	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73161453	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73161465	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161470	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73161472	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73161481	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73161483	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73161486	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73161488	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73161491	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73161492	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73161493	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73161500	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73161502	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73165725	0.95[EUR][1000 genomes]
rs73165729	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73165734	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73165735	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73165764	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7427235	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7427885	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427909	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427937	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7432241	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7610316	0.82[ASN][1000 genomes]
rs7612938	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7618531	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7618836	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7621906	0.81[AMR][1000 genomes]
rs7621978	0.82[ASN][1000 genomes]
rs7622831	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628126	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7634642	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650295	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs959774	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9631485	0.85[EUR][1000 genomes]
rs9681628	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9681747	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9682309	0.89[AMR][1000 genomes]
rs9713431	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9851302	0.95[EUR][1000 genomes]
rs9858820	0.85[EUR][1000 genomes]
rs9876715	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv428080	chr3:17367870-17539943	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv589842	chr3:17381380-17538921	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1009700	chr3:17391240-17486671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv470439	chr3:17394615-17538921	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv589843	chr3:17412690-17525505	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17339400-17442200	Weak transcription	Fetal Intestine Small	intestine
2	chr3:17344400-17439000	Weak transcription	Aorta	Aorta
3	chr3:17398400-17414600	Weak transcription	NHDF-Ad	bronchial
4	chr3:17398800-17414600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:17398800-17430200	Weak transcription	Pancreas	Pancrea
6	chr3:17398800-17447000	Weak transcription	Fetal Stomach	stomach
7	chr3:17401600-17432600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr3:17402400-17443200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:17402600-17451000	Weak transcription	Gastric	stomach
10	chr3:17403000-17443000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:17403200-17449200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:17403400-17442200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr3:17404200-17449200	Weak transcription	Esophagus	oesophagus
14	chr3:17405000-17432400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:17406400-17442000	Weak transcription	Lung	lung
16	chr3:17407600-17443400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:17407800-17419400	Weak transcription	Brain Hippocampus Middle	brain
18	chr3:17409200-17430800	Weak transcription	Fetal Muscle Leg	muscle
19	chr3:17409200-17435000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:17410000-17426800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr3:17410200-17445200	Weak transcription	Right Ventricle	heart
22	chr3:17410200-17445600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr3:17410200-17447200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr3:17410200-17451400	Weak transcription	Brain Angular Gyrus	brain
25	chr3:17410400-17443400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr3:17410400-17447800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr3:17410600-17418400	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr3:17410800-17414600	Strong transcription	Dnd41	blood
29	chr3:17411000-17418400	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr3:17411200-17418400	Strong transcription	Primary B cells from peripheral blood	blood
31	chr3:17411200-17467400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr3:17411600-17414800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr3:17411600-17424000	Weak transcription	Spleen	Spleen
34	chr3:17411600-17425200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr3:17411600-17430800	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr3:17411600-17442000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr3:17411600-17443400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr3:17411800-17449200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr3:17412000-17418200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr3:17412200-17432200	Weak transcription	NH-A	brain
41	chr3:17412200-17437800	Weak transcription	GM12878-XiMat	blood
42	chr3:17412400-17416600	Strong transcription	Primary B cells from cord blood	blood
43	chr3:17412600-17416200	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr3:17412800-17450600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr3:17413000-17415000	Strong transcription	Primary hematopoietic stem cells	blood
46	chr3:17413000-17422000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr3:17413000-17443400	Weak transcription	Duodenum Mucosa	Duodenum
48	chr3:17413400-17445000	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr3:17413400-17453400	Weak transcription	Psoas Muscle	Psoas
50	chr3:17413600-17415000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links