Variant report

Variant	rs7427885
Chromosome Location	chr3:17522383-17522384
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17520321..17522399-chr3:17522640..17525341,2	K562	blood:
2	chr3:17518313..17520629-chr3:17521648..17524012,2	MCF-7	breast:

Extended variants
information (count: 341 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:325)

rs_ID	r²[population]
rs10446414	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10446443	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10446444	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10446445	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10510473	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10510474	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128821	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11128822	0.84[EUR][1000 genomes]
rs11128829	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11128830	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11128831	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11128833	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11914537	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11914797	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11915019	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11915044	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11915560	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11915588	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11916205	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11917482	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918295	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918387	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11920557	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11920751	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11921244	1.00[EUR][1000 genomes]
rs11921357	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921699	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11922177	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922534	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11922536	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11922699	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922701	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922854	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11923589	1.00[EUR][1000 genomes]
rs11923635	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11924717	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11924920	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924970	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11925427	1.00[EUR][1000 genomes]
rs11928397	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11929394	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12106762	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12106770	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12106899	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12106900	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12108135	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12152509	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12185952	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12374023	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374199	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1446301	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1446302	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596863	0.90[EUR][1000 genomes]
rs17029242	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17029249	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043279	0.89[EUR][1000 genomes]
rs17043383	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043392	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17043425	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043427	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043439	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043444	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043453	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043460	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043463	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043467	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043486	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043499	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043506	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043514	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043518	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043556	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043558	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043565	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043568	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043571	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043574	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043578	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043579	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043585	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043589	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043618	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043623	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043631	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043643	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043652	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17200781	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17200881	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17272978	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17273048	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17273076	0.95[EUR][1000 genomes]
rs1823099	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348364	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2881803	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34073532	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35302807	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3935701	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4627740	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56221450	1.00[ASN][1000 genomes]
rs56660137	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56746012	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56757867	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56824662	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56950773	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57087795	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57153645	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57161733	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57201363	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57213690	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57344515	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57427954	1.00[EUR][1000 genomes]
rs57487616	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57825001	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57904270	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58003185	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58035365	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58066441	1.00[EUR][1000 genomes]
rs58233162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58286882	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58473554	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58475382	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58595628	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58617436	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58653570	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58790051	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58856794	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59394144	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59460836	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59582994	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59714365	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60019424	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60066286	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60140283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60158152	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60303234	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60580179	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60909298	1.00[EUR][1000 genomes]
rs60940413	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60964146	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60993983	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61057228	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61186520	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61284353	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61626295	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6766514	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6767839	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768716	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773442	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778109	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780076	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6782575	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6784697	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788957	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6792589	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6792747	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6794164	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6795454	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6803351	0.84[EUR][1000 genomes]
rs6803999	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6804323	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6808999	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809000	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73143799	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73145808	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145809	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145814	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145818	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145819	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145823	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145825	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145827	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145829	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145846	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145856	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145860	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145862	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145864	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145867	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145877	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145883	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145887	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145894	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145896	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145900	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73147810	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153018	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153020	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153024	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153026	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153027	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153028	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153029	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153034	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153038	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153039	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153042	1.00[EUR][1000 genomes]
rs73153047	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153048	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153051	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153052	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153055	0.81[AMR][1000 genomes]
rs73153057	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153058	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153063	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153064	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153069	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153070	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153071	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153072	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153073	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153074	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153075	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153079	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153086	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153089	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153093	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153096	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153102	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73154801	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155203	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155205	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155206	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155208	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155209	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155211	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155213	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155214	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155215	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155225	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155226	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73156310	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156313	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73156314	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156319	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156329	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156333	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156342	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156350	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156353	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156355	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156356	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156363	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156367	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156369	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156372	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73156373	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73156374	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73156378	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73156383	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73156387	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73156390	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73156391	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73156395	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156397	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73158011	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160923	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160937	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160940	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160942	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160943	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160950	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160951	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160957	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73160967	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161403	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161408	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161409	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161412	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161414	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161417	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161422	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161425	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161441	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161446	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161453	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161465	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161470	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161472	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161481	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161483	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161486	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161488	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161491	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161492	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161493	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161500	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161502	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73165725	1.00[EUR][1000 genomes]
rs73165729	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73165734	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73165735	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73165764	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73165792	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7427235	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7427909	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427937	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7432241	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7610316	0.82[ASN][1000 genomes]
rs7612938	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7618531	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7618836	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7619879	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7621906	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7621978	0.82[ASN][1000 genomes]
rs7622831	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628126	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7634642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650295	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs959774	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9681628	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9681747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9682309	0.89[AMR][1000 genomes]
rs9713431	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9851302	1.00[EUR][1000 genomes]
rs9876715	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv428080	chr3:17367870-17539943	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv589842	chr3:17381380-17538921	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv470439	chr3:17394615-17538921	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv589843	chr3:17412690-17525505	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv876593	chr3:17419843-17604963	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv3715	chr3:17514325-17578178	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17476200-17530200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:17498800-17522600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:17511400-17523800	Weak transcription	Brain Anterior Caudate	brain
4	chr3:17512000-17522600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:17512000-17538000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:17516600-17524800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:17516600-17537600	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:17517400-17522600	Weak transcription	Fetal Heart	heart
9	chr3:17519600-17522600	Weak transcription	Adipose Nuclei	Adipose
10	chr3:17519600-17530200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr3:17520200-17537000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:17520400-17522600	Weak transcription	Right Atrium	heart
13	chr3:17520600-17527800	Weak transcription	NHEK	skin
14	chr3:17520800-17524600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr3:17521000-17530200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:17521200-17522800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:17521200-17522800	Strong transcription	Spleen	Spleen
18	chr3:17521200-17523200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
19	chr3:17521200-17524200	Weak transcription	A549	lung
20	chr3:17521400-17522600	Weak transcription	Psoas Muscle	Psoas
21	chr3:17521400-17523000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:17521400-17523000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr3:17521400-17523000	Genic enhancers	Pancreas	Pancrea
24	chr3:17521400-17524000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr3:17521600-17522400	Weak transcription	Left Ventricle	heart
26	chr3:17521600-17522600	Weak transcription	Lung	lung
27	chr3:17521600-17523000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr3:17521600-17523200	Strong transcription	Primary B cells from peripheral blood	blood
29	chr3:17521600-17523200	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr3:17521800-17522400	Weak transcription	Esophagus	oesophagus
31	chr3:17521800-17522600	ZNF genes & repeats	Primary B cells from cord blood	blood
32	chr3:17521800-17522600	Strong transcription	Fetal Intestine Large	intestine
33	chr3:17521800-17522600	ZNF genes & repeats	GM12878-XiMat	blood
34	chr3:17521800-17522800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr3:17521800-17522800	Strong transcription	Ovary	ovary
36	chr3:17521800-17523000	Strong transcription	Duodenum Mucosa	Duodenum
37	chr3:17521800-17523000	ZNF genes & repeats	Fetal Intestine Small	intestine
38	chr3:17521800-17523000	Strong transcription	Fetal Muscle Trunk	muscle
39	chr3:17521800-17523000	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr3:17521800-17523000	ZNF genes & repeats	Thymus	Thymus
41	chr3:17521800-17523200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr3:17521800-17523200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr3:17521800-17523400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
44	chr3:17521800-17535600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr3:17522000-17522400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr3:17522000-17523000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:17522000-17523000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
48	chr3:17522000-17523000	ZNF genes & repeats	Fetal Stomach	stomach
49	chr3:17522000-17523000	Genic enhancers	Gastric	stomach
50	chr3:17522000-17523000	ZNF genes & repeats	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links