Variant report

Variant	rs56660137
Chromosome Location	chr3:17370997-17370998
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 317 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:307)

rs_ID	r²[population]
rs10446414	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10446443	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10446444	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10446445	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10510473	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10510474	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128821	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11128822	0.95[EUR][1000 genomes]
rs11128829	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11128830	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11128831	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11128833	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11914797	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11915019	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11915044	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11915588	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11916205	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11917482	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11918295	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11918387	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11920557	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11920751	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11921244	0.89[EUR][1000 genomes]
rs11921357	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922177	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922534	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11922536	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11922699	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922701	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922854	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11924717	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11924920	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924970	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11925427	0.89[EUR][1000 genomes]
rs11928397	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11929394	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12106762	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12106770	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12108135	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1374199	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1446301	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1446302	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596863	0.81[EUR][1000 genomes]
rs17029242	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029249	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043253	0.95[EUR][1000 genomes]
rs17043279	0.89[EUR][1000 genomes]
rs17043383	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043392	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17043425	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043427	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043439	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043460	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043463	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043467	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043486	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043499	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043506	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043514	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043518	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043556	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17043558	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17043565	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17043568	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17043571	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17043574	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17043578	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17043579	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17043585	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043589	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043618	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043623	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17043631	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17043643	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17043652	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17200781	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17272978	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17273048	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1823099	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028873	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348364	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs283932	0.81[AFR][1000 genomes]
rs2881803	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34073532	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35302807	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3935701	0.81[AMR][1000 genomes]
rs4627740	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56746012	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56757867	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56824662	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56950773	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57087795	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57153645	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57161733	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57201363	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57213690	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57344515	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57427954	0.89[EUR][1000 genomes]
rs57487616	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57825001	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57904270	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58003185	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58035365	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58066441	0.89[EUR][1000 genomes]
rs58233162	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58286882	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58473554	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58475382	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58595628	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58617436	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58653570	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58790051	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58856794	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59394144	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59460836	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59582994	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59714365	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60019424	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60066286	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60140283	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60158152	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60303234	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60580179	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60909298	0.89[EUR][1000 genomes]
rs60964146	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60993983	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61057228	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61186520	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61284353	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61626295	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6766514	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6767839	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773442	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778109	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780076	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6782575	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6784697	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788957	0.81[AMR][1000 genomes]
rs6790367	0.95[EUR][1000 genomes]
rs6792589	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6792747	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6794164	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6795454	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6803351	0.95[EUR][1000 genomes]
rs6803999	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6804323	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6808999	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809000	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73143799	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73145808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145809	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145818	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145823	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145827	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145829	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145846	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145860	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145862	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145864	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145867	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145877	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145883	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145887	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145894	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145896	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145900	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73147810	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153017	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153018	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153020	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153024	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153026	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153027	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153028	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153029	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153034	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153038	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153039	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153042	0.89[EUR][1000 genomes]
rs73153047	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153048	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153050	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153051	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153052	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153055	0.81[AMR][1000 genomes]
rs73153057	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153058	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153059	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153061	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153063	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153064	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153068	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153069	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153070	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153071	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153072	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153073	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153074	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153075	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153079	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153086	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153089	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153093	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153096	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73153102	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73154801	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155203	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73155205	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73155206	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73155208	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155209	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73155211	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73155212	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73155213	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73155214	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73155215	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73155225	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73155226	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73156310	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156313	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73156314	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156319	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156329	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156333	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156342	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156346	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156350	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156352	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156353	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156355	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156356	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156363	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156367	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156369	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156372	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73156373	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73156374	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73156378	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73156383	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73156387	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73156390	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73156391	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73156395	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156397	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73158011	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73160923	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73160929	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73160937	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73160940	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73160942	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73160943	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73160950	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73160951	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73160957	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73161403	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161408	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73161409	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73161412	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73161414	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73161417	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73161422	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73161425	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161441	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73161446	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73161453	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73161465	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161470	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73161472	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73161481	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73161483	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73161486	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73161488	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73161491	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73161492	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73161493	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73161500	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73161502	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7427235	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7427885	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427909	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427937	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7432241	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7610316	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7612938	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7618531	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7618836	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7621906	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7621978	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7622831	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628126	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7634642	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650295	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs959774	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9631485	0.89[EUR][1000 genomes]
rs9681628	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9681747	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9682309	0.89[AMR][1000 genomes]
rs9713431	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9858820	0.89[EUR][1000 genomes]
rs9876715	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv428080	chr3:17367870-17539943	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17298800-17373000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:17330800-17381400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:17333400-17372000	Weak transcription	Liver	Liver
4	chr3:17333400-17376000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:17339400-17442200	Weak transcription	Fetal Intestine Small	intestine
6	chr3:17344400-17439000	Weak transcription	Aorta	Aorta
7	chr3:17352000-17377600	Weak transcription	Dnd41	blood
8	chr3:17354800-17381600	Weak transcription	Ovary	ovary
9	chr3:17356200-17412800	Weak transcription	Left Ventricle	heart
10	chr3:17356800-17390000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr3:17358000-17377600	Weak transcription	Adipose Nuclei	Adipose
12	chr3:17362000-17376200	Weak transcription	Fetal Kidney	kidney
13	chr3:17362800-17382200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:17364600-17387600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:17364800-17375400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr3:17364800-17381800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr3:17365000-17377800	Weak transcription	Fetal Heart	heart
18	chr3:17365200-17383400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:17365400-17390000	Weak transcription	GM12878-XiMat	blood
20	chr3:17365600-17372400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:17365600-17374200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:17365600-17377200	Weak transcription	Primary T cells from cord blood	blood
23	chr3:17365600-17413000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr3:17366800-17372400	Strong transcription	Primary B cells from cord blood	blood
25	chr3:17368400-17381600	Weak transcription	Psoas Muscle	Psoas
26	chr3:17368400-17384200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:17368600-17371400	Weak transcription	Fetal Muscle Leg	muscle
28	chr3:17370000-17406200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr3:17370200-17371800	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr3:17370800-17411000	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links