Variant report

Variant	rs6790367
Chromosome Location	chr3:17297514-17297515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 237 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:232)

rs_ID	r²[population]
rs10446414	0.95[EUR][1000 genomes]
rs10446443	0.95[EUR][1000 genomes]
rs10446444	0.95[EUR][1000 genomes]
rs10446445	0.95[EUR][1000 genomes]
rs10510473	0.95[EUR][1000 genomes]
rs10510474	0.95[EUR][1000 genomes]
rs11128821	0.95[EUR][1000 genomes]
rs11128822	0.89[EUR][1000 genomes]
rs11128829	0.95[EUR][1000 genomes]
rs11128830	0.95[EUR][1000 genomes]
rs11128831	0.95[EUR][1000 genomes]
rs11128833	0.95[EUR][1000 genomes]
rs11915044	0.95[EUR][1000 genomes]
rs11915588	0.95[EUR][1000 genomes]
rs11916205	0.95[EUR][1000 genomes]
rs11917482	0.95[EUR][1000 genomes]
rs11918387	0.95[EUR][1000 genomes]
rs11920557	0.95[EUR][1000 genomes]
rs11921357	0.95[EUR][1000 genomes]
rs11922177	0.95[EUR][1000 genomes]
rs11922534	0.95[EUR][1000 genomes]
rs11922536	0.95[EUR][1000 genomes]
rs11922699	0.89[EUR][1000 genomes]
rs11922701	0.95[EUR][1000 genomes]
rs11924920	0.95[EUR][1000 genomes]
rs11924970	0.95[EUR][1000 genomes]
rs11925427	0.95[EUR][1000 genomes]
rs11929394	0.90[EUR][1000 genomes]
rs12106762	0.95[EUR][1000 genomes]
rs12106770	0.95[EUR][1000 genomes]
rs1374199	0.95[EUR][1000 genomes]
rs1446301	0.95[EUR][1000 genomes]
rs1446302	0.95[EUR][1000 genomes]
rs1449885	0.85[ASN][1000 genomes]
rs1449887	0.88[ASN][1000 genomes]
rs1449888	0.88[ASN][1000 genomes]
rs1596863	0.85[EUR][1000 genomes]
rs17029242	0.95[EUR][1000 genomes]
rs17029249	0.95[EUR][1000 genomes]
rs17043253	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17043279	0.94[EUR][1000 genomes]
rs17043383	0.95[EUR][1000 genomes]
rs17043392	0.95[EUR][1000 genomes]
rs17043425	0.95[EUR][1000 genomes]
rs17043427	0.95[EUR][1000 genomes]
rs17043439	0.95[EUR][1000 genomes]
rs17043444	0.95[EUR][1000 genomes]
rs17043453	0.95[EUR][1000 genomes]
rs17043460	0.95[EUR][1000 genomes]
rs17043463	0.95[EUR][1000 genomes]
rs17043467	0.95[EUR][1000 genomes]
rs17043486	0.89[EUR][1000 genomes]
rs17043499	0.95[EUR][1000 genomes]
rs17043506	0.95[EUR][1000 genomes]
rs17043514	0.95[EUR][1000 genomes]
rs17043518	0.95[EUR][1000 genomes]
rs17043556	0.95[EUR][1000 genomes]
rs17043558	0.95[EUR][1000 genomes]
rs17043565	0.95[EUR][1000 genomes]
rs17043568	0.95[EUR][1000 genomes]
rs17043571	0.95[EUR][1000 genomes]
rs17043574	0.95[EUR][1000 genomes]
rs17043578	0.95[EUR][1000 genomes]
rs17043579	0.95[EUR][1000 genomes]
rs17043585	0.95[EUR][1000 genomes]
rs17043589	0.95[EUR][1000 genomes]
rs17043618	0.95[EUR][1000 genomes]
rs17043623	0.95[EUR][1000 genomes]
rs17043631	0.95[EUR][1000 genomes]
rs17043643	0.95[EUR][1000 genomes]
rs17043652	0.95[EUR][1000 genomes]
rs17200781	0.89[EUR][1000 genomes]
rs17272978	0.89[EUR][1000 genomes]
rs17273048	0.89[EUR][1000 genomes]
rs1823099	0.95[EUR][1000 genomes]
rs2028873	0.95[EUR][1000 genomes]
rs2348004	0.88[ASN][1000 genomes]
rs2348005	0.88[ASN][1000 genomes]
rs2348364	0.95[EUR][1000 genomes]
rs2596641	0.88[ASN][1000 genomes]
rs2596643	0.86[ASN][1000 genomes]
rs2596648	0.80[ASN][1000 genomes]
rs2596649	0.80[ASN][1000 genomes]
rs2596650	0.80[ASN][1000 genomes]
rs2733492	0.80[ASN][1000 genomes]
rs2733495	0.86[ASN][1000 genomes]
rs2733496	0.88[ASN][1000 genomes]
rs2881803	0.95[EUR][1000 genomes]
rs34073532	0.95[EUR][1000 genomes]
rs4627740	0.95[EUR][1000 genomes]
rs56660137	0.95[EUR][1000 genomes]
rs56757867	0.95[EUR][1000 genomes]
rs56824662	0.95[EUR][1000 genomes]
rs56950773	0.95[EUR][1000 genomes]
rs57153645	0.95[EUR][1000 genomes]
rs57161733	0.95[EUR][1000 genomes]
rs57201363	0.95[EUR][1000 genomes]
rs57213690	0.95[EUR][1000 genomes]
rs57825001	0.95[EUR][1000 genomes]
rs57904270	0.95[EUR][1000 genomes]
rs58035365	0.95[EUR][1000 genomes]
rs58066441	0.95[EUR][1000 genomes]
rs58286882	0.95[EUR][1000 genomes]
rs58473554	0.90[EUR][1000 genomes]
rs58617436	0.95[EUR][1000 genomes]
rs58653570	0.95[EUR][1000 genomes]
rs58856794	0.95[EUR][1000 genomes]
rs59394144	0.95[EUR][1000 genomes]
rs59460836	0.95[EUR][1000 genomes]
rs59714365	0.95[EUR][1000 genomes]
rs60019424	0.95[EUR][1000 genomes]
rs60066286	0.95[EUR][1000 genomes]
rs60303234	0.95[EUR][1000 genomes]
rs60580179	0.95[EUR][1000 genomes]
rs60909298	0.95[EUR][1000 genomes]
rs60964146	0.95[EUR][1000 genomes]
rs60993983	0.95[EUR][1000 genomes]
rs61057228	0.95[EUR][1000 genomes]
rs61186520	0.95[EUR][1000 genomes]
rs61626295	0.95[EUR][1000 genomes]
rs6442676	0.85[AFR][1000 genomes]
rs6766514	0.95[EUR][1000 genomes]
rs6767839	0.95[EUR][1000 genomes]
rs6768716	0.95[EUR][1000 genomes]
rs6773442	0.95[EUR][1000 genomes]
rs6778109	0.95[EUR][1000 genomes]
rs6782575	0.95[EUR][1000 genomes]
rs6784697	0.95[EUR][1000 genomes]
rs6788957	0.83[EUR][1000 genomes]
rs6792589	0.95[EUR][1000 genomes]
rs6792747	0.95[EUR][1000 genomes]
rs6794164	0.95[EUR][1000 genomes]
rs6795454	0.95[EUR][1000 genomes]
rs6803351	0.89[EUR][1000 genomes]
rs6803999	0.95[EUR][1000 genomes]
rs6804323	0.95[EUR][1000 genomes]
rs6808999	0.95[EUR][1000 genomes]
rs6809000	0.95[EUR][1000 genomes]
rs73143799	0.95[EUR][1000 genomes]
rs73145808	0.95[EUR][1000 genomes]
rs73145809	0.95[EUR][1000 genomes]
rs73145814	0.95[EUR][1000 genomes]
rs73145818	0.95[EUR][1000 genomes]
rs73145819	0.95[EUR][1000 genomes]
rs73145823	0.95[EUR][1000 genomes]
rs73145825	0.95[EUR][1000 genomes]
rs73145827	0.95[EUR][1000 genomes]
rs73145829	0.95[EUR][1000 genomes]
rs73145846	0.95[EUR][1000 genomes]
rs73145856	0.95[EUR][1000 genomes]
rs73145860	0.95[EUR][1000 genomes]
rs73145862	0.95[EUR][1000 genomes]
rs73145864	0.95[EUR][1000 genomes]
rs73145867	0.95[EUR][1000 genomes]
rs73145877	0.95[EUR][1000 genomes]
rs73145883	0.95[EUR][1000 genomes]
rs73145887	0.95[EUR][1000 genomes]
rs73145894	0.95[EUR][1000 genomes]
rs73145896	0.95[EUR][1000 genomes]
rs73145900	0.95[EUR][1000 genomes]
rs73147810	0.85[EUR][1000 genomes]
rs73153017	0.95[EUR][1000 genomes]
rs73153018	0.95[EUR][1000 genomes]
rs73153020	0.95[EUR][1000 genomes]
rs73153024	0.95[EUR][1000 genomes]
rs73153026	0.95[EUR][1000 genomes]
rs73153027	0.95[EUR][1000 genomes]
rs73153028	0.95[EUR][1000 genomes]
rs73153029	0.95[EUR][1000 genomes]
rs73153034	0.95[EUR][1000 genomes]
rs73154801	0.95[EUR][1000 genomes]
rs73156310	0.95[EUR][1000 genomes]
rs73156314	0.95[EUR][1000 genomes]
rs73156319	0.90[EUR][1000 genomes]
rs73156329	0.95[EUR][1000 genomes]
rs73156333	0.95[EUR][1000 genomes]
rs73156342	0.95[EUR][1000 genomes]
rs73156346	0.95[EUR][1000 genomes]
rs73156350	0.95[EUR][1000 genomes]
rs73156352	0.95[EUR][1000 genomes]
rs73156353	0.95[EUR][1000 genomes]
rs73156355	0.95[EUR][1000 genomes]
rs73156356	0.95[EUR][1000 genomes]
rs73156363	0.95[EUR][1000 genomes]
rs73156367	0.95[EUR][1000 genomes]
rs73156369	0.95[EUR][1000 genomes]
rs73156372	0.95[EUR][1000 genomes]
rs73156373	0.95[EUR][1000 genomes]
rs73156374	0.95[EUR][1000 genomes]
rs73156378	0.95[EUR][1000 genomes]
rs73156383	0.95[EUR][1000 genomes]
rs73156387	0.95[EUR][1000 genomes]
rs73156390	0.95[EUR][1000 genomes]
rs73156391	0.95[EUR][1000 genomes]
rs73156395	0.95[EUR][1000 genomes]
rs73156397	0.95[EUR][1000 genomes]
rs73158011	0.95[EUR][1000 genomes]
rs73161403	0.95[EUR][1000 genomes]
rs73161408	0.95[EUR][1000 genomes]
rs73161409	0.95[EUR][1000 genomes]
rs73161412	0.95[EUR][1000 genomes]
rs73161414	0.95[EUR][1000 genomes]
rs73161417	0.95[EUR][1000 genomes]
rs73161422	0.95[EUR][1000 genomes]
rs73161425	0.95[EUR][1000 genomes]
rs73161441	0.95[EUR][1000 genomes]
rs73161446	0.95[EUR][1000 genomes]
rs73161453	0.95[EUR][1000 genomes]
rs73161465	0.95[EUR][1000 genomes]
rs73161470	0.95[EUR][1000 genomes]
rs73161472	0.95[EUR][1000 genomes]
rs73161481	0.95[EUR][1000 genomes]
rs73161483	0.95[EUR][1000 genomes]
rs73161486	0.95[EUR][1000 genomes]
rs73161488	0.95[EUR][1000 genomes]
rs73161491	0.95[EUR][1000 genomes]
rs73161492	0.95[EUR][1000 genomes]
rs73161493	0.95[EUR][1000 genomes]
rs73161500	0.95[EUR][1000 genomes]
rs73161502	0.95[EUR][1000 genomes]
rs7432241	0.95[EUR][1000 genomes]
rs7610316	0.81[EUR][1000 genomes]
rs7612938	0.95[EUR][1000 genomes]
rs7621906	0.85[EUR][1000 genomes]
rs7621978	0.81[EUR][1000 genomes]
rs7622831	0.95[EUR][1000 genomes]
rs7628126	0.95[EUR][1000 genomes]
rs7634642	0.95[EUR][1000 genomes]
rs7650295	0.95[EUR][1000 genomes]
rs959774	0.95[EUR][1000 genomes]
rs9631485	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9858820	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876588	chr3:17214070-17314872	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876589	chr3:17230884-17346355	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17250000-17330200	Weak transcription	Aorta	Aorta
2	chr3:17255200-17363800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:17263200-17307200	Weak transcription	Fetal Intestine Small	intestine
4	chr3:17273600-17330200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:17277400-17298800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:17277600-17328600	Weak transcription	Primary T cells from cord blood	blood
7	chr3:17277800-17297800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:17279400-17298200	Weak transcription	Liver	Liver
9	chr3:17279400-17330200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:17279800-17299800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr3:17279800-17329600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:17280000-17299200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:17280000-17300400	Weak transcription	Dnd41	blood
14	chr3:17280400-17302400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr3:17290000-17301600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr3:17290200-17301400	Weak transcription	NHDF-Ad	bronchial
17	chr3:17290800-17298800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr3:17291800-17311000	Weak transcription	Primary B cells from cord blood	blood
19	chr3:17293000-17306200	Weak transcription	Right Ventricle	heart
20	chr3:17294800-17299000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:17296600-17330200	Weak transcription	Left Ventricle	heart

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