The 2.0 version of rSNPBase

Variant report

Variant rs17200781
Chromosome Location chr3:17357728-17357729
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:28 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:17255200-17363800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr3:17298800-17373000 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr3:17330800-17381400 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr3:17333000-17360400 Weak transcription GM12878-XiMat blood
5 chr3:17333400-17363400 Weak transcription Primary hematopoietic stem cells short term culture blood
6 chr3:17333400-17372000 Weak transcription Liver Liver
7 chr3:17333400-17376000 Weak transcription Duodenum Smooth Muscle Duodenum
8 chr3:17339400-17442200 Weak transcription Fetal Intestine Small intestine
9 chr3:17340600-17362600 Weak transcription Primary hematopoietic stem cells blood
10 chr3:17342600-17364400 Weak transcription Primary T cells fromperipheralblood blood
11 chr3:17343200-17363600 Weak transcription Primary T cells from cord blood blood
12 chr3:17343400-17363200 Weak transcription Primary T helper naive cells fromperipheralblood blood
13 chr3:17344400-17439000 Weak transcription Aorta Aorta
14 chr3:17345800-17364000 Weak transcription Brain Substantia Nigra brain
15 chr3:17347800-17364000 Weak transcription Primary B cells from cord blood blood
16 chr3:17349400-17364400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
17 chr3:17349600-17357800 Weak transcription Primary B cells from peripheral blood blood
18 chr3:17349600-17364000 Weak transcription Monocytes-CD14+_RO01746 blood
19 chr3:17352000-17377600 Weak transcription Dnd41 blood
20 chr3:17352200-17370800 Weak transcription Fetal Lung lung
21 chr3:17354800-17381600 Weak transcription Ovary ovary
22 chr3:17356200-17412800 Weak transcription Left Ventricle heart
23 chr3:17356400-17360600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr3:17356800-17390000 Weak transcription Fetal Muscle Trunk muscle
25 chr3:17357200-17358400 Enhancers K562 blood
26 chr3:17357400-17357800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr3:17357400-17358200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr3:17357600-17358000 Enhancers Adipose Nuclei Adipose

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Last update: Aug 31, 2015