Variant report

Variant	rs9631485
Chromosome Location	chr3:17261669-17261670
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 198 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:192)

rs_ID	r²[population]
rs10446414	0.89[EUR][1000 genomes]
rs10446443	0.89[EUR][1000 genomes]
rs10446444	0.89[EUR][1000 genomes]
rs10446445	0.89[EUR][1000 genomes]
rs10510473	0.89[EUR][1000 genomes]
rs10510474	0.89[EUR][1000 genomes]
rs11128821	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11128822	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11128829	0.89[EUR][1000 genomes]
rs11128830	0.89[EUR][1000 genomes]
rs11128831	0.89[EUR][1000 genomes]
rs11915044	0.89[EUR][1000 genomes]
rs11915588	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11916205	0.89[EUR][1000 genomes]
rs11917482	0.89[EUR][1000 genomes]
rs11918387	0.89[EUR][1000 genomes]
rs11921357	0.89[EUR][1000 genomes]
rs11922699	0.83[EUR][1000 genomes]
rs11922701	0.89[EUR][1000 genomes]
rs11924920	0.89[EUR][1000 genomes]
rs11925427	0.89[EUR][1000 genomes]
rs11929394	0.85[EUR][1000 genomes]
rs12106762	0.89[EUR][1000 genomes]
rs12106770	0.89[EUR][1000 genomes]
rs13067876	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1374199	0.89[EUR][1000 genomes]
rs1446301	0.89[EUR][1000 genomes]
rs1446302	0.89[EUR][1000 genomes]
rs1449885	0.86[ASN][1000 genomes]
rs1449887	0.82[ASN][1000 genomes]
rs1449888	0.82[ASN][1000 genomes]
rs1463222	0.91[JPT][hapmap]
rs1596863	0.81[EUR][1000 genomes]
rs17029242	0.89[EUR][1000 genomes]
rs17029249	0.89[EUR][1000 genomes]
rs17043253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17043279	1.00[EUR][1000 genomes]
rs17043383	0.89[EUR][1000 genomes]
rs17043392	0.89[EUR][1000 genomes]
rs17043425	0.89[EUR][1000 genomes]
rs17043427	0.89[EUR][1000 genomes]
rs17043439	0.89[EUR][1000 genomes]
rs17043444	0.89[EUR][1000 genomes]
rs17043453	0.89[EUR][1000 genomes]
rs17043460	0.89[EUR][1000 genomes]
rs17043463	0.89[EUR][1000 genomes]
rs17043467	0.89[EUR][1000 genomes]
rs17043486	0.94[EUR][1000 genomes]
rs17043499	0.89[EUR][1000 genomes]
rs17043506	0.89[EUR][1000 genomes]
rs17043514	0.89[EUR][1000 genomes]
rs17043518	0.89[EUR][1000 genomes]
rs17043556	0.89[EUR][1000 genomes]
rs17043558	0.89[EUR][1000 genomes]
rs17043565	0.89[EUR][1000 genomes]
rs17043568	0.89[EUR][1000 genomes]
rs17043571	0.89[EUR][1000 genomes]
rs17043574	0.89[EUR][1000 genomes]
rs17043578	0.89[EUR][1000 genomes]
rs17043579	0.89[EUR][1000 genomes]
rs17043585	0.89[EUR][1000 genomes]
rs17043589	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17043618	0.89[EUR][1000 genomes]
rs17043623	0.89[EUR][1000 genomes]
rs17043631	0.89[EUR][1000 genomes]
rs17043643	0.89[EUR][1000 genomes]
rs17043652	0.89[EUR][1000 genomes]
rs17200781	0.94[EUR][1000 genomes]
rs17272978	0.94[EUR][1000 genomes]
rs17273048	0.94[EUR][1000 genomes]
rs1823099	0.89[EUR][1000 genomes]
rs2028873	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2348004	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2348005	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2348364	0.89[EUR][1000 genomes]
rs2596641	0.82[ASN][1000 genomes]
rs2596643	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs2596648	0.83[JPT][hapmap]
rs2596662	0.91[JPT][hapmap]
rs2733492	0.91[JPT][hapmap]
rs2733495	0.81[ASN][1000 genomes]
rs2733496	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs34073532	0.89[EUR][1000 genomes]
rs35185755	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4627740	0.89[EUR][1000 genomes]
rs56660137	0.89[EUR][1000 genomes]
rs56757867	0.89[EUR][1000 genomes]
rs56824662	0.89[EUR][1000 genomes]
rs57213690	0.89[EUR][1000 genomes]
rs58035365	0.89[EUR][1000 genomes]
rs58066441	0.89[EUR][1000 genomes]
rs58286882	0.89[EUR][1000 genomes]
rs58653570	0.89[EUR][1000 genomes]
rs58856794	0.89[EUR][1000 genomes]
rs59394144	0.89[EUR][1000 genomes]
rs59460836	0.89[EUR][1000 genomes]
rs59714365	0.89[EUR][1000 genomes]
rs60019424	0.89[EUR][1000 genomes]
rs60303234	0.89[EUR][1000 genomes]
rs60580179	0.89[EUR][1000 genomes]
rs60964146	0.89[EUR][1000 genomes]
rs61057228	0.89[EUR][1000 genomes]
rs61186520	0.89[EUR][1000 genomes]
rs61626295	0.89[EUR][1000 genomes]
rs6766514	0.89[EUR][1000 genomes]
rs6767839	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6768716	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6773442	0.89[EUR][1000 genomes]
rs6778109	0.89[EUR][1000 genomes]
rs6784697	0.89[EUR][1000 genomes]
rs6790367	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6792589	0.89[EUR][1000 genomes]
rs6792747	0.89[EUR][1000 genomes]
rs6794164	0.89[EUR][1000 genomes]
rs6803351	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6803999	0.89[EUR][1000 genomes]
rs6808999	0.89[EUR][1000 genomes]
rs6809000	0.89[EUR][1000 genomes]
rs73143799	0.89[EUR][1000 genomes]
rs73145808	0.89[EUR][1000 genomes]
rs73145809	0.89[EUR][1000 genomes]
rs73145814	0.89[EUR][1000 genomes]
rs73145818	0.89[EUR][1000 genomes]
rs73145819	0.89[EUR][1000 genomes]
rs73145823	0.89[EUR][1000 genomes]
rs73145825	0.89[EUR][1000 genomes]
rs73145827	0.89[EUR][1000 genomes]
rs73145829	0.89[EUR][1000 genomes]
rs73145846	0.89[EUR][1000 genomes]
rs73145856	0.89[EUR][1000 genomes]
rs73145860	0.89[EUR][1000 genomes]
rs73145862	0.89[EUR][1000 genomes]
rs73145864	0.89[EUR][1000 genomes]
rs73145867	0.89[EUR][1000 genomes]
rs73145877	0.89[EUR][1000 genomes]
rs73145883	0.89[EUR][1000 genomes]
rs73145887	0.89[EUR][1000 genomes]
rs73145894	0.89[EUR][1000 genomes]
rs73145896	0.89[EUR][1000 genomes]
rs73145900	0.89[EUR][1000 genomes]
rs73147810	0.81[EUR][1000 genomes]
rs73154801	0.89[EUR][1000 genomes]
rs73156310	0.89[EUR][1000 genomes]
rs73156314	0.89[EUR][1000 genomes]
rs73156319	0.85[EUR][1000 genomes]
rs73156329	0.89[EUR][1000 genomes]
rs73156333	0.89[EUR][1000 genomes]
rs73156342	0.89[EUR][1000 genomes]
rs73156346	0.89[EUR][1000 genomes]
rs73156350	0.89[EUR][1000 genomes]
rs73156352	0.89[EUR][1000 genomes]
rs73156353	0.89[EUR][1000 genomes]
rs73156355	0.89[EUR][1000 genomes]
rs73156356	0.89[EUR][1000 genomes]
rs73156363	0.89[EUR][1000 genomes]
rs73156367	0.89[EUR][1000 genomes]
rs73156369	0.89[EUR][1000 genomes]
rs73156372	0.89[EUR][1000 genomes]
rs73156373	0.89[EUR][1000 genomes]
rs73156374	0.89[EUR][1000 genomes]
rs73156378	0.89[EUR][1000 genomes]
rs73156383	0.89[EUR][1000 genomes]
rs73156387	0.89[EUR][1000 genomes]
rs73156390	0.89[EUR][1000 genomes]
rs73156391	0.89[EUR][1000 genomes]
rs73156395	0.89[EUR][1000 genomes]
rs73156397	0.89[EUR][1000 genomes]
rs73158011	0.89[EUR][1000 genomes]
rs73161403	0.89[EUR][1000 genomes]
rs73161408	0.89[EUR][1000 genomes]
rs73161409	0.89[EUR][1000 genomes]
rs73161412	0.89[EUR][1000 genomes]
rs73161414	0.89[EUR][1000 genomes]
rs73161417	0.89[EUR][1000 genomes]
rs73161422	0.89[EUR][1000 genomes]
rs73161425	0.89[EUR][1000 genomes]
rs73161441	0.89[EUR][1000 genomes]
rs73161446	0.89[EUR][1000 genomes]
rs73161453	0.89[EUR][1000 genomes]
rs73161465	0.89[EUR][1000 genomes]
rs73161470	0.89[EUR][1000 genomes]
rs73161472	0.89[EUR][1000 genomes]
rs7621906	0.81[EUR][1000 genomes]
rs7622831	0.89[EUR][1000 genomes]
rs7650336	0.88[AFR][1000 genomes]
rs959774	0.89[EUR][1000 genomes]
rs9838780	0.88[AFR][1000 genomes]
rs9841955	0.88[AFR][1000 genomes]
rs9858820	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864049	0.88[AFR][1000 genomes]
rs9866815	0.87[YRI][hapmap];0.88[AFR][1000 genomes]
rs9880199	0.87[YRI][hapmap];0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv589841	chr3:17214070-17290465	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876588	chr3:17214070-17314872	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876589	chr3:17230884-17346355	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17221600-17295800	Weak transcription	HSMM	muscle
2	chr3:17244200-17280600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:17244400-17261800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:17244400-17271800	Weak transcription	Spleen	Spleen
5	chr3:17244600-17263000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr3:17244600-17274600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:17244600-17279400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr3:17244600-17280600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:17244600-17282000	Weak transcription	Gastric	stomach
10	chr3:17244600-17282800	Weak transcription	Pancreas	Pancrea
11	chr3:17244800-17267000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr3:17244800-17280400	Weak transcription	Fetal Stomach	stomach
13	chr3:17245800-17281200	Weak transcription	Lung	lung
14	chr3:17246200-17262800	Weak transcription	Fetal Intestine Small	intestine
15	chr3:17246200-17264200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:17249600-17262000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:17250000-17262800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:17250000-17330200	Weak transcription	Aorta	Aorta
19	chr3:17254800-17273200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr3:17254800-17279600	Weak transcription	Ovary	ovary
21	chr3:17255000-17263000	Weak transcription	Dnd41	blood
22	chr3:17255000-17264400	Weak transcription	Adipose Nuclei	Adipose
23	chr3:17255000-17274800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr3:17255000-17297000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr3:17255200-17263000	Weak transcription	Left Ventricle	heart
26	chr3:17255200-17278600	Weak transcription	Liver	Liver
27	chr3:17255200-17281000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr3:17255200-17363800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:17256000-17267000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr3:17256200-17265000	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr3:17260400-17264200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:17261000-17262000	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr3:17261200-17263400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
34	chr3:17261400-17261800	Strong transcription	Primary B cells from cord blood	blood
35	chr3:17261400-17262200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr3:17261400-17263000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr3:17261400-17263000	Weak transcription	Fetal Lung	lung
38	chr3:17261600-17268600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links