Variant report

Variant	rs35185755
Chromosome Location	chr3:17227522-17227523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13067876	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1463222	0.83[ASN][1000 genomes]
rs17043279	0.81[EUR][1000 genomes]
rs2596662	0.84[ASN][1000 genomes]
rs2596676	0.86[ASN][1000 genomes]
rs2596682	0.84[ASN][1000 genomes]
rs2733480	0.86[ASN][1000 genomes]
rs2733522	0.82[ASN][1000 genomes]
rs2733525	0.84[ASN][1000 genomes]
rs9631485	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9858820	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv589841	chr3:17214070-17290465	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876588	chr3:17214070-17314872	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17201200-17236200	Weak transcription	Fetal Brain Male	brain
2	chr3:17203800-17244200	Weak transcription	Colonic Mucosa	Colon
3	chr3:17208200-17244000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:17208400-17228600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:17208400-17243800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr3:17208400-17244000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr3:17208800-17234400	Weak transcription	Brain Angular Gyrus	brain
8	chr3:17209000-17234000	Weak transcription	Brain Substantia Nigra	brain
9	chr3:17209600-17234000	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:17209600-17236800	Weak transcription	Gastric	stomach
11	chr3:17210000-17244000	Weak transcription	Esophagus	oesophagus
12	chr3:17215600-17236800	Weak transcription	Pancreas	Pancrea
13	chr3:17217600-17242600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:17217800-17232000	Weak transcription	Spleen	Spleen
15	chr3:17217800-17234200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr3:17218000-17243800	Weak transcription	Colon Smooth Muscle	Colon
17	chr3:17218600-17236800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:17219200-17230400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:17221000-17236600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:17221400-17229800	Weak transcription	HSMMtube	muscle
21	chr3:17221600-17228200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:17221600-17229400	Weak transcription	Psoas Muscle	Psoas
23	chr3:17221600-17230200	Weak transcription	Brain Germinal Matrix	brain
24	chr3:17221600-17232600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:17221600-17243200	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr3:17221600-17244000	Weak transcription	Thymus	Thymus
27	chr3:17221600-17295800	Weak transcription	HSMM	muscle
28	chr3:17221800-17232400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr3:17223800-17229400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr3:17223800-17236600	Weak transcription	Fetal Brain Female	brain
31	chr3:17224000-17232000	Weak transcription	Right Ventricle	heart
32	chr3:17224000-17243400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr3:17224000-17243800	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr3:17224000-17244000	Weak transcription	Aorta	Aorta
35	chr3:17224600-17233200	Weak transcription	Small Intestine	intestine
36	chr3:17224800-17229200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr3:17224800-17243800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr3:17224800-17243800	Weak transcription	Placenta	Placenta
39	chr3:17225200-17230200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr3:17225200-17232000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr3:17225400-17229000	Weak transcription	Left Ventricle	heart
42	chr3:17225400-17230000	Weak transcription	Fetal Lung	lung
43	chr3:17225400-17232000	Weak transcription	Fetal Thymus	thymus
44	chr3:17225400-17232000	Weak transcription	Lung	lung
45	chr3:17225400-17232000	Weak transcription	Right Atrium	heart
46	chr3:17225400-17232400	Weak transcription	Primary T cells from cord blood	blood
47	chr3:17225400-17236800	Weak transcription	Fetal Stomach	stomach
48	chr3:17225400-17244000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:17225600-17228400	Weak transcription	Fetal Heart	heart
50	chr3:17225600-17231800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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