Variant report

Variant	rs7621978
Chromosome Location	chr3:17384675-17384676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10446414	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10446443	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10446444	0.86[EUR][1000 genomes]
rs10446445	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10510473	0.82[ASN][1000 genomes]
rs10510474	0.82[ASN][1000 genomes]
rs11128821	0.86[EUR][1000 genomes]
rs11128822	0.81[EUR][1000 genomes]
rs11915588	0.82[ASN][1000 genomes]
rs11916205	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11921357	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11922177	0.82[ASN][1000 genomes]
rs11922699	0.82[ASN][1000 genomes]
rs11922701	0.82[ASN][1000 genomes]
rs11924920	0.82[ASN][1000 genomes]
rs1446302	0.82[ASN][1000 genomes]
rs17029242	0.86[EUR][1000 genomes]
rs17029249	0.82[ASN][1000 genomes]
rs17043253	0.81[EUR][1000 genomes]
rs17043383	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17043392	0.86[EUR][1000 genomes]
rs17043425	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17043427	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17043439	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17043444	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17043453	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17043460	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17043463	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17043467	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17043486	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17043499	0.82[ASN][1000 genomes]
rs17043506	0.82[ASN][1000 genomes]
rs17043514	0.82[ASN][1000 genomes]
rs17043518	0.82[ASN][1000 genomes]
rs17043585	0.82[ASN][1000 genomes]
rs17043589	0.82[ASN][1000 genomes]
rs17043618	0.82[ASN][1000 genomes]
rs17200781	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17272978	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17273048	0.82[ASN][1000 genomes]
rs1823099	0.82[ASN][1000 genomes]
rs2028873	0.82[ASN][1000 genomes]
rs56660137	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57213690	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58035365	0.82[ASN][1000 genomes]
rs58286882	0.82[ASN][1000 genomes]
rs58856794	0.82[ASN][1000 genomes]
rs59714365	0.82[ASN][1000 genomes]
rs60303234	0.82[ASN][1000 genomes]
rs61186520	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6767839	0.82[ASN][1000 genomes]
rs6768716	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6773442	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6778109	0.82[ASN][1000 genomes]
rs6784697	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6790367	0.81[EUR][1000 genomes]
rs6794164	0.86[EUR][1000 genomes]
rs6803351	0.81[EUR][1000 genomes]
rs6808999	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73143799	0.86[EUR][1000 genomes]
rs73145808	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73145809	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73145814	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73145818	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73145819	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73145823	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73145825	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73145827	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73145829	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73145846	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73145856	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73145860	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73145862	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73145864	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73145867	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73145877	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73145883	0.82[ASN][1000 genomes]
rs73145887	0.82[ASN][1000 genomes]
rs73145894	0.82[ASN][1000 genomes]
rs73145896	0.82[ASN][1000 genomes]
rs73145900	0.82[ASN][1000 genomes]
rs73147810	0.82[ASN][1000 genomes]
rs73153017	0.82[ASN][1000 genomes]
rs73153050	0.82[ASN][1000 genomes]
rs73153059	0.82[ASN][1000 genomes]
rs73153061	0.82[ASN][1000 genomes]
rs73153068	0.82[ASN][1000 genomes]
rs73154801	0.82[ASN][1000 genomes]
rs73155208	0.82[ASN][1000 genomes]
rs73156310	0.82[ASN][1000 genomes]
rs73156313	0.82[ASN][1000 genomes]
rs73156314	0.82[ASN][1000 genomes]
rs73156319	0.82[ASN][1000 genomes]
rs73156329	0.82[ASN][1000 genomes]
rs73156333	0.82[ASN][1000 genomes]
rs73156342	0.82[ASN][1000 genomes]
rs73156346	0.82[ASN][1000 genomes]
rs73156350	0.82[ASN][1000 genomes]
rs73156352	0.82[ASN][1000 genomes]
rs73156353	0.82[ASN][1000 genomes]
rs73156355	0.82[ASN][1000 genomes]
rs73156356	0.82[ASN][1000 genomes]
rs73156363	0.82[ASN][1000 genomes]
rs73156367	0.82[ASN][1000 genomes]
rs73156369	0.82[ASN][1000 genomes]
rs73156395	0.82[ASN][1000 genomes]
rs73156397	0.82[ASN][1000 genomes]
rs73160967	0.82[ASN][1000 genomes]
rs73161403	0.82[ASN][1000 genomes]
rs73161425	0.82[ASN][1000 genomes]
rs73161465	0.82[ASN][1000 genomes]
rs7427885	0.82[ASN][1000 genomes]
rs7427909	0.82[ASN][1000 genomes]
rs7427937	0.82[ASN][1000 genomes]
rs7612938	0.82[ASN][1000 genomes]
rs7622831	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7634642	0.82[ASN][1000 genomes]
rs959774	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9681747	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv428080	chr3:17367870-17539943	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv589842	chr3:17381380-17538921	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17339400-17442200	Weak transcription	Fetal Intestine Small	intestine
2	chr3:17344400-17439000	Weak transcription	Aorta	Aorta
3	chr3:17356200-17412800	Weak transcription	Left Ventricle	heart
4	chr3:17356800-17390000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:17364600-17387600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:17365400-17390000	Weak transcription	GM12878-XiMat	blood
7	chr3:17365600-17413000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:17370000-17406200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr3:17370800-17411000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr3:17372400-17410600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr3:17378200-17393600	Weak transcription	Dnd41	blood
12	chr3:17378400-17391800	Weak transcription	Esophagus	oesophagus
13	chr3:17379800-17414400	Weak transcription	HSMM	muscle
14	chr3:17381200-17389800	Weak transcription	Primary B cells from cord blood	blood

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