Variant report

Variant	rs9682309
Chromosome Location	chr3:17574126-17574127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs11915019	0.89[AMR][1000 genomes]
rs11915588	0.89[AMR][1000 genomes]
rs11918387	0.89[AMR][1000 genomes]
rs11920751	0.89[AMR][1000 genomes]
rs11922177	0.89[AMR][1000 genomes]
rs11922854	0.89[AMR][1000 genomes]
rs11924920	0.89[AMR][1000 genomes]
rs11928397	0.89[AMR][1000 genomes]
rs12108135	0.89[AMR][1000 genomes]
rs1446302	0.89[AMR][1000 genomes]
rs17043444	0.89[AMR][1000 genomes]
rs17043453	0.89[AMR][1000 genomes]
rs17043585	0.89[AMR][1000 genomes]
rs17043589	0.89[AMR][1000 genomes]
rs17043618	0.89[AMR][1000 genomes]
rs1823099	0.89[AMR][1000 genomes]
rs2028873	0.89[AMR][1000 genomes]
rs34073532	0.89[AMR][1000 genomes]
rs4627740	0.89[AMR][1000 genomes]
rs56660137	0.89[AMR][1000 genomes]
rs56746012	0.89[AMR][1000 genomes]
rs56950773	0.89[AMR][1000 genomes]
rs57087795	0.89[AMR][1000 genomes]
rs57161733	0.89[AMR][1000 genomes]
rs57344515	0.89[AMR][1000 genomes]
rs57487616	0.89[AMR][1000 genomes]
rs58003185	0.89[AMR][1000 genomes]
rs58035365	0.89[AMR][1000 genomes]
rs58233162	0.89[AMR][1000 genomes]
rs58475382	0.89[AMR][1000 genomes]
rs58595628	0.89[AMR][1000 genomes]
rs58617436	0.89[AMR][1000 genomes]
rs58790051	0.89[AMR][1000 genomes]
rs58856794	0.89[AMR][1000 genomes]
rs59460836	0.89[AMR][1000 genomes]
rs60140283	0.89[AMR][1000 genomes]
rs60580179	0.89[AMR][1000 genomes]
rs61284353	0.89[AMR][1000 genomes]
rs6767839	0.89[AMR][1000 genomes]
rs6768716	0.89[AMR][1000 genomes]
rs6778109	0.89[AMR][1000 genomes]
rs73143799	0.89[AMR][1000 genomes]
rs73145808	0.89[AMR][1000 genomes]
rs73145809	0.89[AMR][1000 genomes]
rs73145814	0.89[AMR][1000 genomes]
rs73145819	0.89[AMR][1000 genomes]
rs73145825	0.89[AMR][1000 genomes]
rs73145856	0.89[AMR][1000 genomes]
rs73145883	0.89[AMR][1000 genomes]
rs73145887	0.89[AMR][1000 genomes]
rs73153017	0.89[AMR][1000 genomes]
rs73153050	0.89[AMR][1000 genomes]
rs73153059	0.89[AMR][1000 genomes]
rs73153061	0.89[AMR][1000 genomes]
rs73153063	0.89[AMR][1000 genomes]
rs73153064	0.89[AMR][1000 genomes]
rs73153068	0.89[AMR][1000 genomes]
rs73153069	0.89[AMR][1000 genomes]
rs73153070	0.89[AMR][1000 genomes]
rs73153071	0.89[AMR][1000 genomes]
rs73153072	0.89[AMR][1000 genomes]
rs73153073	0.89[AMR][1000 genomes]
rs73153074	0.89[AMR][1000 genomes]
rs73153075	0.89[AMR][1000 genomes]
rs73153079	0.89[AMR][1000 genomes]
rs73153086	0.89[AMR][1000 genomes]
rs73153089	0.89[AMR][1000 genomes]
rs73153093	0.89[AMR][1000 genomes]
rs73153096	0.89[AMR][1000 genomes]
rs73153102	0.89[AMR][1000 genomes]
rs73155203	0.89[AMR][1000 genomes]
rs73155205	0.89[AMR][1000 genomes]
rs73155206	0.89[AMR][1000 genomes]
rs73155208	0.89[AMR][1000 genomes]
rs73155209	0.89[AMR][1000 genomes]
rs73155211	0.89[AMR][1000 genomes]
rs73155212	0.89[AMR][1000 genomes]
rs73155213	0.89[AMR][1000 genomes]
rs73155214	0.89[AMR][1000 genomes]
rs73155215	0.89[AMR][1000 genomes]
rs73155225	0.89[AMR][1000 genomes]
rs73155226	0.89[AMR][1000 genomes]
rs73156319	0.89[AMR][1000 genomes]
rs73156333	0.89[AMR][1000 genomes]
rs73156342	0.89[AMR][1000 genomes]
rs73156346	0.89[AMR][1000 genomes]
rs73156350	0.89[AMR][1000 genomes]
rs73156352	0.89[AMR][1000 genomes]
rs73156353	0.89[AMR][1000 genomes]
rs73156397	0.89[AMR][1000 genomes]
rs73160923	0.89[AMR][1000 genomes]
rs73160929	0.89[AMR][1000 genomes]
rs73160937	0.89[AMR][1000 genomes]
rs73161403	0.89[AMR][1000 genomes]
rs73161425	0.89[AMR][1000 genomes]
rs73161465	0.89[AMR][1000 genomes]
rs73161481	0.89[AMR][1000 genomes]
rs7427885	0.89[AMR][1000 genomes]
rs7612938	0.89[AMR][1000 genomes]
rs7618531	0.89[AMR][1000 genomes]
rs7618836	0.89[AMR][1000 genomes]
rs7634642	0.89[AMR][1000 genomes]
rs9681628	0.89[AMR][1000 genomes]
rs9681747	0.89[AMR][1000 genomes]
rs9713431	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv876593	chr3:17419843-17604963	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv3715	chr3:17514325-17578178	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17530600-17587600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:17536400-17574800	Weak transcription	Dnd41	blood
3	chr3:17536600-17588000	Weak transcription	Left Ventricle	heart
4	chr3:17548600-17579200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:17550000-17583800	Weak transcription	Primary B cells from cord blood	blood
6	chr3:17550200-17574800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr3:17557600-17597200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:17560600-17579800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:17561000-17599000	Weak transcription	Pancreas	Pancrea
10	chr3:17562000-17586800	Weak transcription	A549	lung
11	chr3:17563200-17593400	Weak transcription	Aorta	Aorta
12	chr3:17571400-17578800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:17572200-17574200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:17574000-17574600	Weak transcription	GM12878-XiMat	blood

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