Variant report

Variant	rs35811992
Chromosome Location	chr3:17793235-17793236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17782468..17785976-chr3:17793028..17797546,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131374	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10433560	0.81[AFR][1000 genomes]
rs10433561	0.90[AFR][1000 genomes]
rs11128852	0.81[AFR][1000 genomes]
rs12488591	0.85[AFR][1000 genomes]
rs13079096	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4312680	0.85[AFR][1000 genomes]
rs4349529	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4611850	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4643736	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4908938	0.90[AFR][1000 genomes]
rs4908967	0.81[AFR][1000 genomes]
rs4908970	0.92[AFR][1000 genomes]
rs4908971	0.92[AFR][1000 genomes]
rs4908972	0.90[AFR][1000 genomes]
rs6789467	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6804837	0.86[AFR][1000 genomes]
rs7627732	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17784800-17794000	Weak transcription	Pancreas	Pancrea
2	chr3:17785000-17794000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:17789400-17794800	Weak transcription	HSMMtube	muscle
4	chr3:17789600-17795000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:17789800-17794000	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:17790600-17795200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr3:17791200-17794000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:17791200-17800800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:17791400-17796800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:17791600-17793400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:17791600-17793600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:17791600-17793800	Weak transcription	Adipose Nuclei	Adipose
13	chr3:17791600-17794000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:17791600-17794000	Weak transcription	NHDF-Ad	bronchial
15	chr3:17791600-17794200	Weak transcription	K562	blood
16	chr3:17791600-17794600	Weak transcription	Stomach Mucosa	stomach
17	chr3:17791600-17794800	Weak transcription	HepG2	liver
18	chr3:17791600-17796800	Weak transcription	HMEC	breast
19	chr3:17791600-17796800	Weak transcription	NHEK	skin
20	chr3:17791800-17794200	Weak transcription	Liver	Liver
21	chr3:17791800-17797200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr3:17791800-17797200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr3:17792200-17797000	Weak transcription	GM12878-XiMat	blood
24	chr3:17792200-17797200	Weak transcription	Dnd41	blood

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