Variant report

Variant	rs11128840
Chromosome Location	chr3:17704787-17704788
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17697081..17699650-chr3:17703020..17705438,2	K562	blood:

Extended variants
information (count: 179 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:173)

rs_ID	r²[population]
rs10433560	0.81[EUR][1000 genomes]
rs10433561	0.85[EUR][1000 genomes]
rs10510477	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10510478	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11128836	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128837	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11128838	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128841	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11128842	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11128843	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11128844	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11128848	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11128849	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11128850	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11128852	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11708672	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11719266	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11719326	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11927637	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11927654	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11929111	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12487248	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12487916	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12488591	0.87[EUR][1000 genomes]
rs12490933	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12497320	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12631291	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12632570	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12634674	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12634893	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13061771	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13065637	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13069155	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13071728	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13071934	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13076724	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13079096	0.91[EUR][1000 genomes]
rs13083917	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13085167	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13096559	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13097908	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13320647	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34002492	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34297417	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34485427	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34487714	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34786175	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34990533	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35460334	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35642812	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35697509	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36172181	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4128509	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4243835	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4243836	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4243837	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4243838	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4312680	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4349529	0.91[EUR][1000 genomes]
rs4377510	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4408889	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4431138	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4435673	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4435674	0.86[EUR][1000 genomes]
rs4444738	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4470554	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4482690	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4484221	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4488868	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4513482	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4566567	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4566568	0.86[EUR][1000 genomes]
rs4568172	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4589965	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4602424	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4611850	0.91[EUR][1000 genomes]
rs4637311	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4643736	0.90[EUR][1000 genomes]
rs4908938	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4908939	0.85[EUR][1000 genomes]
rs4908940	0.86[EUR][1000 genomes]
rs4908958	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4908963	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4908964	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4908965	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4908966	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4908967	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4908968	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4908969	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4908970	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4908971	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4908972	0.86[EUR][1000 genomes]
rs4908973	0.86[EUR][1000 genomes]
rs4908987	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4908992	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4909009	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4909010	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4909012	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5014632	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55701200	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56059241	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57309958	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61081795	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61236237	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6577616	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6577617	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6577618	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6577619	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6577622	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6577643	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6577644	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6768637	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6779834	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6780587	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6784025	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788190	0.82[EUR][1000 genomes]
rs6789467	0.91[EUR][1000 genomes]
rs6789697	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6792422	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6795189	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6796448	0.86[EUR][1000 genomes]
rs6797952	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6803312	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6804837	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6806610	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6807020	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809062	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6809775	0.80[EUR][1000 genomes]
rs6810235	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7427588	0.80[EUR][1000 genomes]
rs7431897	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7609916	0.80[EUR][1000 genomes]
rs7613953	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7617683	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7622878	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7627064	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7627732	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7630695	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7632240	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7633601	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7645459	0.82[EUR][1000 genomes]
rs7647914	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7647928	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7650617	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7651998	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652156	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8179891	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8179983	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9310524	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9310526	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9310528	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9681232	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9681617	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9681644	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9681893	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9756494	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9757339	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9815204	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9816920	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9821318	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9821955	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9823767	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9839588	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847461	0.85[EUR][1000 genomes]
rs9847477	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9853571	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9857910	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9860854	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9867064	0.87[EUR][1000 genomes]
rs9875973	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9880456	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9880971	0.88[EUR][1000 genomes]
rs9881089	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1849856	chr3:17646794-17748688	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17668800-17706200	Weak transcription	Primary B cells from cord blood	blood
2	chr3:17681800-17714400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:17694400-17721800	Weak transcription	A549	lung
4	chr3:17695000-17706200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:17697600-17707000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:17697800-17705600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:17697800-17706200	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:17698000-17706000	Weak transcription	Brain Substantia Nigra	brain
9	chr3:17698600-17706000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:17698600-17706600	Weak transcription	Left Ventricle	heart
11	chr3:17702000-17705800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:17702200-17718400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:17702200-17719000	Weak transcription	Dnd41	blood
14	chr3:17702600-17706200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:17703000-17714200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:17703400-17706200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr3:17704600-17706000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr3:17704600-17706800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links