Variant report

Variant	rs11708391
Chromosome Location	chr3:17414753-17414754
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr3:17414249-17415071	Hela-S3	cervix:	n/a	chr3:17414916-17414927 chr3:17414298-17414309
2	CEBPB	chr3:17414275-17415060	IMR90	lung:	n/a	chr3:17414916-17414927 chr3:17414298-17414309
3	POLR2A	chr3:17414666-17415107	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
TBC1D5	TF binding region

Extended variants
information (count: 272 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:257)

rs_ID	r²[population]
rs10212255	0.87[EUR][1000 genomes]
rs10510475	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10865749	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1120412	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713917	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11717644	0.86[EUR][1000 genomes]
rs12488093	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12488687	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12493567	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12494513	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13093375	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13095571	0.80[EUR][1000 genomes]
rs13318609	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13318886	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320647	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320693	0.86[EUR][1000 genomes]
rs13322641	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13327810	0.86[EUR][1000 genomes]
rs13353435	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1374197	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1375817	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1375818	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1446303	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449879	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1449881	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1449882	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1449883	0.80[AMR][1000 genomes]
rs1449884	0.82[EUR][1000 genomes]
rs1449885	0.91[EUR][1000 genomes]
rs1449886	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1449887	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1449888	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1463218	0.83[EUR][1000 genomes]
rs1463222	0.86[EUR][1000 genomes]
rs1470667	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1545424	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1597393	0.82[EUR][1000 genomes]
rs1597394	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17043422	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17043492	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17043494	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17043539	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17043541	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17200818	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17200839	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867772	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs187303	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2028874	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060623	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2060624	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2060625	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2060627	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2060628	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2060629	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2084572	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2121262	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2122368	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2167118	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2167119	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2247106	0.82[EUR][1000 genomes]
rs2252237	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2348003	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2348004	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2348005	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2348363	0.89[ASN][1000 genomes]
rs2470347	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2470577	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2470580	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2470581	0.80[AMR][1000 genomes]
rs2470583	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2592099	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2596636	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2596637	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2596638	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2596639	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2596640	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2596641	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2596643	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2596645	0.83[EUR][1000 genomes]
rs2596646	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2596647	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2596648	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2596649	0.92[EUR][1000 genomes]
rs2596650	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2596652	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2596658	0.81[AMR][1000 genomes]
rs2596662	0.88[EUR][1000 genomes]
rs2596664	0.80[AMR][1000 genomes]
rs2596665	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2596666	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2596667	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2596669	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2596670	0.82[EUR][1000 genomes]
rs2596671	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2596672	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2596673	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2596674	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2596675	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2596676	0.86[EUR][1000 genomes]
rs2596677	0.84[EUR][1000 genomes]
rs2596678	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2596679	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2596680	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2596681	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2596682	0.86[EUR][1000 genomes]
rs2733478	0.85[EUR][1000 genomes]
rs2733479	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2733481	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2733485	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2733486	0.81[EUR][1000 genomes]
rs2733487	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2733489	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2733491	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2733492	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2733493	0.83[EUR][1000 genomes]
rs2733494	0.83[EUR][1000 genomes]
rs2733495	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2733496	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2733497	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2733498	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2733499	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2733500	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2733501	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2733502	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2733504	0.85[AMR][1000 genomes]
rs2733507	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2733508	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2733509	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2733510	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2733514	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2733515	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2733517	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2733518	0.87[AMR][1000 genomes]
rs2733522	0.86[EUR][1000 genomes]
rs2733523	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2733524	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2733525	0.86[EUR][1000 genomes]
rs2733529	0.80[AMR][1000 genomes]
rs283906	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs283907	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs283908	0.85[EUR][1000 genomes]
rs283909	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs283911	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs283912	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs283913	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs283914	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs283915	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs283916	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs283917	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs283918	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs283919	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs283921	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs283922	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs283923	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs283925	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs283927	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs283928	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs283929	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs283930	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs283931	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs283934	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs283935	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs283936	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs283937	0.85[EUR][1000 genomes]
rs283938	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs283940	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs283941	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs283942	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs283943	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs283944	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs283945	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs283946	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs283947	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs283948	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs283949	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28408438	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28454413	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34502358	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34892692	0.87[EUR][1000 genomes]
rs35126965	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35234876	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35521582	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4312642	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582042	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4615062	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58307801	0.82[EUR][1000 genomes]
rs62245860	0.81[AMR][1000 genomes]
rs62245914	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62245947	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6442679	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6442680	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6442681	0.86[EUR][1000 genomes]
rs6442682	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6442683	0.86[EUR][1000 genomes]
rs6762516	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6763593	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6772394	0.87[EUR][1000 genomes]
rs6785870	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6787756	0.86[EUR][1000 genomes]
rs6788763	0.86[EUR][1000 genomes]
rs6792443	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6799259	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6801690	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802891	0.82[AMR][1000 genomes]
rs728022	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7614318	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7617933	0.86[AMR][1000 genomes]
rs7623979	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7625175	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625855	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630286	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7630433	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7632989	0.86[EUR][1000 genomes]
rs7636787	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7642719	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7644020	0.85[EUR][1000 genomes]
rs7644389	0.85[EUR][1000 genomes]
rs7645756	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7647905	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7648883	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7651278	0.86[EUR][1000 genomes]
rs7652792	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs767685	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9310516	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310519	1.00[ASN][1000 genomes]
rs9310520	0.85[ASN][1000 genomes]
rs9310524	1.00[ASN][1000 genomes]
rs9310526	1.00[ASN][1000 genomes]
rs9756494	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9757339	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9810675	0.86[EUR][1000 genomes]
rs9812906	0.85[EUR][1000 genomes]
rs9813532	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9815204	1.00[ASN][1000 genomes]
rs9817290	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9820703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821318	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823064	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9823767	1.00[ASN][1000 genomes]
rs9824952	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9830240	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9835988	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9843640	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9847477	1.00[ASN][1000 genomes]
rs9848610	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9848766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850127	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9851518	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9852861	0.86[EUR][1000 genomes]
rs9854201	0.86[EUR][1000 genomes]
rs9861749	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9864494	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9874826	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9875973	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878954	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9882273	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883518	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv428080	chr3:17367870-17539943	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv589842	chr3:17381380-17538921	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1009700	chr3:17391240-17486671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv470439	chr3:17394615-17538921	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv589843	chr3:17412690-17525505	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17339400-17442200	Weak transcription	Fetal Intestine Small	intestine
2	chr3:17344400-17439000	Weak transcription	Aorta	Aorta
3	chr3:17398800-17430200	Weak transcription	Pancreas	Pancrea
4	chr3:17398800-17447000	Weak transcription	Fetal Stomach	stomach
5	chr3:17401600-17432600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr3:17402400-17443200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:17402600-17451000	Weak transcription	Gastric	stomach
8	chr3:17403000-17443000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:17403200-17449200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:17403400-17442200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr3:17404200-17449200	Weak transcription	Esophagus	oesophagus
12	chr3:17405000-17432400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:17406400-17442000	Weak transcription	Lung	lung
14	chr3:17407600-17443400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:17407800-17419400	Weak transcription	Brain Hippocampus Middle	brain
16	chr3:17409200-17430800	Weak transcription	Fetal Muscle Leg	muscle
17	chr3:17409200-17435000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:17410000-17426800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr3:17410200-17445200	Weak transcription	Right Ventricle	heart
20	chr3:17410200-17445600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:17410200-17447200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr3:17410200-17451400	Weak transcription	Brain Angular Gyrus	brain
23	chr3:17410400-17443400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr3:17410400-17447800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:17410600-17418400	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr3:17411000-17418400	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr3:17411200-17418400	Strong transcription	Primary B cells from peripheral blood	blood
28	chr3:17411200-17467400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr3:17411600-17414800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr3:17411600-17424000	Weak transcription	Spleen	Spleen
31	chr3:17411600-17425200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr3:17411600-17430800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr3:17411600-17442000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr3:17411600-17443400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr3:17411800-17449200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr3:17412000-17418200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr3:17412200-17432200	Weak transcription	NH-A	brain
38	chr3:17412200-17437800	Weak transcription	GM12878-XiMat	blood
39	chr3:17412400-17416600	Strong transcription	Primary B cells from cord blood	blood
40	chr3:17412600-17416200	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr3:17412800-17450600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr3:17413000-17415000	Strong transcription	Primary hematopoietic stem cells	blood
43	chr3:17413000-17422000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr3:17413000-17443400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr3:17413400-17445000	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr3:17413400-17453400	Weak transcription	Psoas Muscle	Psoas
47	chr3:17413600-17415000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr3:17413600-17415000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr3:17413600-17415000	Weak transcription	Adipose Nuclei	Adipose
50	chr3:17413600-17415600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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