The 2.0 version of rSNPBase

Variant report

Variant rs1597394
Chromosome Location chr3:17260188-17260189
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:17221600-17295800 Weak transcription HSMM muscle
2 chr3:17244200-17261200 Weak transcription Colon Smooth Muscle Colon
3 chr3:17244200-17280600 Weak transcription Rectal Smooth Muscle rectum
4 chr3:17244400-17261800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr3:17244400-17271800 Weak transcription Spleen Spleen
6 chr3:17244600-17263000 Weak transcription Primary T helper naive cells fromperipheralblood blood
7 chr3:17244600-17274600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr3:17244600-17279400 Weak transcription Primary neutrophils fromperipheralblood blood
9 chr3:17244600-17280600 Weak transcription Duodenum Mucosa Duodenum
10 chr3:17244600-17282000 Weak transcription Gastric stomach
11 chr3:17244600-17282800 Weak transcription Pancreas Pancrea
12 chr3:17244800-17267000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr3:17244800-17280400 Weak transcription Fetal Stomach stomach
14 chr3:17245200-17261200 Weak transcription Fetal Lung lung
15 chr3:17245800-17281200 Weak transcription Lung lung
16 chr3:17246200-17262800 Weak transcription Fetal Intestine Small intestine
17 chr3:17246200-17264200 Weak transcription Brain Inferior Temporal Lobe brain
18 chr3:17249600-17262000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr3:17250000-17262800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
20 chr3:17250000-17330200 Weak transcription Aorta Aorta
21 chr3:17253800-17261200 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr3:17254600-17260800 Weak transcription Primary B cells from cord blood blood
23 chr3:17254800-17273200 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr3:17254800-17279600 Weak transcription Ovary ovary
25 chr3:17255000-17260200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
26 chr3:17255000-17260200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr3:17255000-17260200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr3:17255000-17260400 Weak transcription Primary hematopoietic stem cells short term culture blood
29 chr3:17255000-17263000 Weak transcription Dnd41 blood
30 chr3:17255000-17264400 Weak transcription Adipose Nuclei Adipose
31 chr3:17255000-17274800 Weak transcription Primary T regulatory cells fromperipheralblood blood
32 chr3:17255000-17297000 Weak transcription Primary T cells fromperipheralblood blood
33 chr3:17255200-17261200 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr3:17255200-17263000 Weak transcription Left Ventricle heart
35 chr3:17255200-17278600 Weak transcription Liver Liver
36 chr3:17255200-17281000 Weak transcription Fetal Adrenal Gland Adrenal Gland
37 chr3:17255200-17363800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr3:17256000-17267000 Weak transcription Primary B cells from peripheral blood blood
39 chr3:17256200-17265000 Weak transcription Primary monocytes fromperipheralblood blood
40 chr3:17259600-17261000 Weak transcription Monocytes-CD14+_RO01746 blood
41 chr3:17259800-17261200 Weak transcription Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015