Variant report

Variant	rs7636787
Chromosome Location	chr3:17433760-17433761
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17426084..17429101-chr3:17432439..17434660,3	MCF-7	breast:

Extended variants
information (count: 283 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:267)

rs_ID	r²[population]
rs10212255	1.00[CEU][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10510475	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10865749	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1120412	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11708391	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11713917	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11717644	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12488093	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12488687	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12493567	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12494513	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13093375	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13095571	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13318609	0.96[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13318886	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs13320647	0.89[CEU][hapmap]
rs13320693	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13322641	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13327810	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13353435	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1374197	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1375817	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375818	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446303	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1449879	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449881	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1449882	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs1449883	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1449884	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1449885	0.82[EUR][1000 genomes]
rs1449886	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449887	0.81[EUR][1000 genomes]
rs1449888	0.81[EUR][1000 genomes]
rs1463218	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs1463221	0.84[EUR][1000 genomes]
rs1470667	0.83[EUR][1000 genomes]
rs1545424	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1597393	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1597394	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043422	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17043492	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043494	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17043539	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17043541	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17200818	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17200839	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1867772	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs187303	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2028874	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2060623	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2060624	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2060625	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2060626	0.82[EUR][1000 genomes]
rs2060627	0.93[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2060628	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2060629	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2084572	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2121262	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2122368	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2167118	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167119	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2247106	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs2252237	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348001	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs2348003	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2348004	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs2348005	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs2470347	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470577	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470578	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470580	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2470581	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2470583	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2592099	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2596636	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596637	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2596638	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596639	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596640	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596641	0.82[EUR][1000 genomes]
rs2596643	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2596645	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs2596646	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2596647	0.91[EUR][1000 genomes]
rs2596648	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs2596649	0.82[EUR][1000 genomes]
rs2596650	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs2596652	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2596655	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2596656	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs2596657	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs2596658	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2596662	0.89[CEU][hapmap]
rs2596663	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2596664	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596665	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596666	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2596667	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596669	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596670	0.90[EUR][1000 genomes]
rs2596671	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596672	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2596673	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596674	0.92[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596675	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596677	0.92[EUR][1000 genomes]
rs2596678	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596679	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596680	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596681	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733478	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733479	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733481	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2733485	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733487	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733489	0.83[EUR][1000 genomes]
rs2733491	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733492	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs2733493	0.91[EUR][1000 genomes]
rs2733494	0.91[EUR][1000 genomes]
rs2733495	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs2733496	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs2733497	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733498	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733499	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2733500	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733501	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733502	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2733504	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733507	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733508	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2733509	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2733510	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733514	0.92[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733515	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs2733516	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs2733517	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733518	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2733519	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs2733520	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs2733521	0.93[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2733523	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733524	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733526	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs2733527	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2733528	0.93[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2733529	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2733530	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs283906	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs283907	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs283908	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs283909	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283911	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs283912	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283913	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283914	0.83[EUR][1000 genomes]
rs283915	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283916	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283917	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs283918	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283919	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283921	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs283922	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283923	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283925	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283927	0.96[CEU][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs283928	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs283929	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs283930	0.90[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs283931	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs283934	0.89[EUR][1000 genomes]
rs283935	0.96[CEU][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs283936	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs283937	0.93[EUR][1000 genomes]
rs283938	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283940	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs283941	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs283942	0.86[EUR][1000 genomes]
rs283943	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs283944	0.96[CEU][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs283945	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs283946	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs283947	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs283948	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs283949	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28408438	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28454413	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34502358	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34892692	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35126965	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35234876	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35521582	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4312642	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4582042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4615062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58307801	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62245860	0.88[EUR][1000 genomes]
rs62245914	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62245947	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6442679	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6442680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6442681	1.00[CEU][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6442682	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6442683	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6762516	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6763593	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6763681	0.96[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[ASN][1000 genomes]
rs6772394	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6785870	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6787756	1.00[CEU][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6788763	0.89[CEU][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6792443	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6799259	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6801690	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6802891	0.83[EUR][1000 genomes]
rs723813	0.93[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs728022	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7614318	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7617933	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7623979	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7625175	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7625855	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7630286	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7630433	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7632989	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7642719	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644020	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7644389	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7645756	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7647905	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7648883	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7651278	0.96[CEU][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7652792	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs767685	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9310516	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9756494	0.89[CEU][hapmap]
rs9810675	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9812199	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9812906	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9813532	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9815204	0.93[CEU][hapmap]
rs9817290	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs9820703	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9821318	0.89[CEU][hapmap]
rs9823064	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9823767	0.89[CEU][hapmap]
rs9824952	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9830240	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9835988	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9843640	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9847461	0.93[CEU][hapmap];0.83[AMR][1000 genomes]
rs9847477	0.90[CEU][hapmap]
rs9848610	0.96[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9848766	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9850127	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9851518	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9852861	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9854201	1.00[CEU][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9861749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864494	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9874826	0.85[EUR][1000 genomes]
rs9878954	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs9880971	0.83[AMR][1000 genomes]
rs9881089	0.82[AMR][1000 genomes]
rs9881850	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9882273	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9883518	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv428080	chr3:17367870-17539943	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv589842	chr3:17381380-17538921	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1009700	chr3:17391240-17486671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv470439	chr3:17394615-17538921	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv589843	chr3:17412690-17525505	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv876593	chr3:17419843-17604963	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17339400-17442200	Weak transcription	Fetal Intestine Small	intestine
2	chr3:17344400-17439000	Weak transcription	Aorta	Aorta
3	chr3:17398800-17447000	Weak transcription	Fetal Stomach	stomach
4	chr3:17402400-17443200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:17402600-17451000	Weak transcription	Gastric	stomach
6	chr3:17403000-17443000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:17403200-17449200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:17403400-17442200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr3:17404200-17449200	Weak transcription	Esophagus	oesophagus
10	chr3:17406400-17442000	Weak transcription	Lung	lung
11	chr3:17407600-17443400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr3:17409200-17435000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:17410200-17445200	Weak transcription	Right Ventricle	heart
14	chr3:17410200-17445600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:17410200-17447200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr3:17410200-17451400	Weak transcription	Brain Angular Gyrus	brain
17	chr3:17410400-17443400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:17410400-17447800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:17411200-17467400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr3:17411600-17442000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr3:17411600-17443400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr3:17411800-17449200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr3:17412200-17437800	Weak transcription	GM12878-XiMat	blood
24	chr3:17412800-17450600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr3:17413000-17443400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr3:17413400-17445000	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr3:17413400-17453400	Weak transcription	Psoas Muscle	Psoas
28	chr3:17413600-17435600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:17413600-17443400	Weak transcription	Fetal Lung	lung
30	chr3:17413600-17445400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr3:17413600-17447600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr3:17413600-17449400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr3:17413800-17441800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr3:17413800-17443400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr3:17415200-17435000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:17415200-17448000	Weak transcription	HSMM	muscle
37	chr3:17416200-17440000	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr3:17420800-17454800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr3:17423000-17443400	Weak transcription	Osteobl	bone
40	chr3:17424000-17445000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr3:17424400-17443800	Weak transcription	Spleen	Spleen
42	chr3:17425600-17435600	Weak transcription	Dnd41	blood
43	chr3:17426600-17449200	Weak transcription	HepG2	liver
44	chr3:17427000-17440600	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr3:17427000-17449000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr3:17427400-17445600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr3:17427400-17447400	Weak transcription	A549	lung
48	chr3:17427600-17434800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr3:17427800-17440600	Weak transcription	Brain Anterior Caudate	brain
50	chr3:17428200-17438800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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