Variant report

Variant	rs2733527
Chromosome Location	chr3:17237409-17237410
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17237100..17237983-chr3:17274337..17275064,3	MCF-7	breast:
2	chr3:17234686..17237852-chr3:17239726..17243177,3	MCF-7	breast:

Extended variants
information (count: 235 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:230)

rs_ID	r²[population]
rs10212255	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10510475	0.85[CEU][hapmap]
rs11713917	0.96[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717644	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11720653	1.00[ASN][1000 genomes]
rs12488093	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12493567	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs12494513	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13093375	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13318609	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13318886	0.89[CEU][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap]
rs13322641	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13353435	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374197	0.89[CEU][hapmap];0.87[MEX][hapmap]
rs1375817	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1375818	0.96[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1449879	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1449881	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.93[MEX][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449882	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs1449883	0.96[CEU][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1449884	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449885	0.84[EUR][1000 genomes]
rs1449886	0.96[CEU][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1449887	0.84[EUR][1000 genomes]
rs1449888	0.84[EUR][1000 genomes]
rs1463218	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1463221	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1463222	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs1470667	0.82[EUR][1000 genomes]
rs1545424	1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1597393	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1597394	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17043422	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17043492	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17043494	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043539	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043541	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17200818	0.81[CEU][hapmap];0.87[MEX][hapmap]
rs17200839	0.85[CEU][hapmap]
rs17273020	1.00[CHB][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[ASN][1000 genomes]
rs1867772	0.88[CEU][hapmap]
rs187303	0.92[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs2028874	0.84[CEU][hapmap]
rs2060623	0.92[CEU][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs2060624	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060625	0.96[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2060626	0.81[EUR][1000 genomes]
rs2060627	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2060628	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060629	0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2084572	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2122368	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167118	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2167119	0.93[EUR][1000 genomes]
rs2247106	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2252237	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2348001	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348003	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348004	0.85[CEU][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs2348005	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2470347	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2470349	1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[ASN][1000 genomes]
rs2470577	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2470578	0.83[AMR][1000 genomes]
rs2470580	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2470581	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2470583	0.96[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2592099	0.92[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2596636	0.96[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2596637	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596638	0.96[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2596639	0.95[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2596640	0.96[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2596641	0.83[EUR][1000 genomes]
rs2596643	0.92[CEU][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs2596645	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596646	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2596647	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596648	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs2596649	0.83[EUR][1000 genomes]
rs2596650	0.89[CEU][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs2596652	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2596655	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2596656	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2596657	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.93[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596658	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2596662	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs2596663	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2596664	0.96[CEU][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2596665	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.87[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2596666	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596667	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2596669	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2596670	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596671	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2596672	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596673	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2596674	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2596675	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2596676	0.90[EUR][1000 genomes]
rs2596677	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2596678	0.96[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2596679	0.92[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2596680	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2596681	0.89[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2596682	0.90[EUR][1000 genomes]
rs2733478	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2733479	0.92[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2733481	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733485	0.92[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2733487	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2733489	0.82[EUR][1000 genomes]
rs2733491	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs2733492	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs2733493	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733494	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733495	0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2733496	0.89[CEU][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs2733497	0.96[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2733498	0.96[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2733499	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733500	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2733501	0.96[CEU][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2733502	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733504	0.89[EUR][1000 genomes]
rs2733507	0.92[EUR][1000 genomes]
rs2733508	1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733509	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733510	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2733514	0.92[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2733515	0.92[CEU][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs2733516	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.87[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733517	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2733518	0.96[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2733519	0.96[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733520	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733521	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2733522	0.90[EUR][1000 genomes]
rs2733523	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2733524	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2733525	0.90[EUR][1000 genomes]
rs2733526	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733528	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2733529	0.96[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2733530	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs283906	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs283907	0.92[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs283908	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283909	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs283911	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283912	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs283913	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs283914	0.81[EUR][1000 genomes]
rs283915	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs283916	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs283917	0.92[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs283918	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs283919	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs283921	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs283922	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs283923	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs283925	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs283926	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs283927	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283928	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs283929	0.81[CEU][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap]
rs283930	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs283931	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs283935	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283936	0.89[CEU][hapmap]
rs283937	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs283938	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs283939	1.00[ASN][1000 genomes]
rs283940	0.89[CEU][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap]
rs283941	0.92[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs283943	0.92[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs283944	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283945	0.89[CEU][hapmap]
rs283946	0.92[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs283947	0.92[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs283948	0.92[CEU][hapmap];0.92[GIH][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs283949	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28408438	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28454413	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34502358	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34892692	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35126965	0.81[EUR][1000 genomes]
rs35234876	0.83[EUR][1000 genomes]
rs4452307	1.00[CHD][hapmap]
rs4582042	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs4615062	0.83[EUR][1000 genomes]
rs58307801	0.87[EUR][1000 genomes]
rs62245860	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62245914	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6442662	1.00[CHD][hapmap]
rs6442679	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6442680	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs6442681	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6442683	0.81[EUR][1000 genomes]
rs6762516	0.89[CEU][hapmap]
rs6763593	0.89[CEU][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap]
rs6763681	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs6785870	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6787756	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6799259	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6801690	0.88[CEU][hapmap]
rs6802891	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs723813	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs728022	0.81[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.81[LWK][hapmap];0.93[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7617933	0.92[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs7623979	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630286	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630433	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7632989	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636787	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs7642719	0.83[EUR][1000 genomes]
rs7645756	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647905	0.85[CEU][hapmap];0.87[MEX][hapmap]
rs7648883	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651278	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs767685	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.93[MEX][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9810675	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817290	0.92[CEU][hapmap]
rs9820703	0.89[CEU][hapmap]
rs9830240	0.89[CEU][hapmap]
rs9848610	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9848766	0.88[CEU][hapmap]
rs9850127	0.89[CEU][hapmap]
rs9861749	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs9870741	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv589841	chr3:17214070-17290465	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876588	chr3:17214070-17314872	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876589	chr3:17230884-17346355	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2733527	LSM3	cis	parietal	SCAN

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17203800-17244200	Weak transcription	Colonic Mucosa	Colon
2	chr3:17208200-17244000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:17208400-17243800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr3:17208400-17244000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr3:17210000-17244000	Weak transcription	Esophagus	oesophagus
6	chr3:17217600-17242600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:17218000-17243800	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:17221600-17243200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr3:17221600-17244000	Weak transcription	Thymus	Thymus
10	chr3:17221600-17295800	Weak transcription	HSMM	muscle
11	chr3:17224000-17243400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr3:17224000-17243800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr3:17224000-17244000	Weak transcription	Aorta	Aorta
14	chr3:17224800-17243800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr3:17224800-17243800	Weak transcription	Placenta	Placenta
16	chr3:17225400-17244000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:17225600-17240200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr3:17225600-17256000	Weak transcription	HepG2	liver
19	chr3:17225800-17237600	Weak transcription	NHLF	lung
20	chr3:17225800-17243600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr3:17225800-17254800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:17226400-17243400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:17226400-17243600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr3:17226400-17243800	Weak transcription	Fetal Intestine Small	intestine
25	chr3:17226400-17243800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr3:17226600-17238000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr3:17226600-17239600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:17226600-17242800	Weak transcription	Fetal Intestine Large	intestine
29	chr3:17226800-17241800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:17226800-17243600	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr3:17227000-17239600	Weak transcription	Dnd41	blood
32	chr3:17230600-17242600	Weak transcription	Fetal Muscle Leg	muscle
33	chr3:17232600-17243000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr3:17232600-17243800	Weak transcription	Spleen	Spleen
35	chr3:17232800-17244000	Weak transcription	Primary T cells from cord blood	blood
36	chr3:17233000-17240400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr3:17233400-17243000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr3:17233800-17238600	Enhancers	Primary B cells from cord blood	blood
39	chr3:17234000-17238600	Enhancers	Brain Substantia Nigra	brain
40	chr3:17234200-17238600	Enhancers	Brain Anterior Caudate	brain
41	chr3:17234200-17238600	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr3:17234600-17237600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr3:17234800-17242800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:17235800-17238400	Enhancers	Primary B cells from peripheral blood	blood
45	chr3:17236200-17238000	Enhancers	Fetal Brain Male	brain
46	chr3:17236200-17238400	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr3:17236200-17254600	Weak transcription	A549	lung
48	chr3:17236400-17237800	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr3:17236400-17238000	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr3:17236400-17238000	Enhancers	Liver	Liver

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