Variant report

Variant	rs4452307
Chromosome Location	chr3:17087834-17087835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11549705	0.86[ASW][hapmap];0.82[MEX][hapmap]
rs1375817	1.00[CHD][hapmap]
rs1375818	1.00[CHD][hapmap]
rs1449881	1.00[CHD][hapmap]
rs1463221	1.00[CHD][hapmap]
rs17272789	0.85[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596638	1.00[CHD][hapmap]
rs2596657	1.00[CHD][hapmap]
rs2596665	1.00[CHD][hapmap]
rs2733499	1.00[CHD][hapmap]
rs2733500	1.00[CHD][hapmap]
rs2733516	1.00[CHD][hapmap]
rs2733518	1.00[CHD][hapmap]
rs2733520	1.00[CHD][hapmap]
rs2733526	1.00[CHD][hapmap]
rs2733527	1.00[CHD][hapmap]
rs2733529	1.00[CHD][hapmap]
rs4130495	0.84[YRI][hapmap]
rs56386177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57955299	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61413357	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs62245974	1.00[ASN][1000 genomes]
rs6442662	1.00[ASW][hapmap];1.00[CHD][hapmap];0.96[LWK][hapmap];0.85[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6765761	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772001	1.00[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs6772050	0.86[ASW][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs6773420	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796868	0.87[ASW][hapmap];1.00[YRI][hapmap]
rs6798989	0.82[EUR][1000 genomes]
rs73145323	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73146928	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151352	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151357	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153248	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153264	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73816262	1.00[ASN][1000 genomes]
rs7614547	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649318	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822682	0.82[MEX][hapmap]
rs9845551	0.84[YRI][hapmap]
rs9870977	0.84[YRI][hapmap]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17055400-17088800	Weak transcription	Thymus	Thymus
2	chr3:17060000-17088600	Weak transcription	Pancreas	Pancrea
3	chr3:17070000-17093600	Weak transcription	Fetal Lung	lung
4	chr3:17073000-17088800	Weak transcription	Right Atrium	heart
5	chr3:17073000-17093000	Weak transcription	Spleen	Spleen
6	chr3:17077400-17094600	Weak transcription	Psoas Muscle	Psoas
7	chr3:17079800-17090000	Strong transcription	Primary B cells from cord blood	blood
8	chr3:17080800-17090200	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:17081000-17088800	Weak transcription	Lung	lung
10	chr3:17081200-17111400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:17081600-17090000	Strong transcription	Primary T cells from cord blood	blood
12	chr3:17081600-17090200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:17081800-17090000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr3:17082200-17089800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:17082400-17090200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:17082400-17092800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:17082600-17089400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:17082600-17090000	Weak transcription	Fetal Brain Female	brain
19	chr3:17082600-17097000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr3:17083000-17096600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:17083000-17097200	Weak transcription	NH-A	brain
22	chr3:17083000-17109600	Weak transcription	Fetal Intestine Large	intestine
23	chr3:17083200-17090000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr3:17083200-17111600	Weak transcription	Stomach Mucosa	stomach
25	chr3:17083800-17090400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr3:17084000-17089400	Strong transcription	Primary hematopoietic stem cells	blood
27	chr3:17084000-17089400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:17084000-17090600	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr3:17084000-17091200	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr3:17084000-17094800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr3:17084200-17090200	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr3:17084200-17090400	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr3:17084200-17090400	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr3:17084400-17089400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr3:17085000-17095800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr3:17085200-17090200	Strong transcription	Primary B cells from peripheral blood	blood
37	chr3:17085200-17090200	Strong transcription	Placenta	Placenta
38	chr3:17085600-17089000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr3:17085600-17089400	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr3:17085600-17089800	Weak transcription	A549	lung
41	chr3:17085800-17088200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr3:17085800-17088400	Weak transcription	Esophagus	oesophagus
43	chr3:17085800-17089400	Weak transcription	Fetal Heart	heart
44	chr3:17085800-17094000	Weak transcription	Aorta	Aorta
45	chr3:17085800-17112200	Weak transcription	Gastric	stomach
46	chr3:17086000-17094600	Weak transcription	Brain Germinal Matrix	brain
47	chr3:17086000-17096000	Weak transcription	Right Ventricle	heart
48	chr3:17086000-17096400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr3:17086600-17088000	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr3:17086600-17089800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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