Variant report

Variant	rs6772050
Chromosome Location	chr3:17121931-17121932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17118420..17120285-chr3:17121140..17122882,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11549705	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17272789	0.85[CEU][hapmap]
rs17272817	1.00[CHB][hapmap]
rs4452307	0.86[ASW][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs60043409	0.87[EUR][1000 genomes]
rs6442662	0.86[ASW][hapmap]
rs6772001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773420	0.89[EUR][1000 genomes]
rs6791174	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9841482	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868443	0.87[EUR][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17089400-17135000	Weak transcription	Pancreas	Pancrea
2	chr3:17103400-17134400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr3:17107000-17133400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:17107200-17126200	Weak transcription	Fetal Kidney	kidney
5	chr3:17107600-17122800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr3:17110800-17132200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:17111400-17129400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:17111800-17130600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:17112000-17132000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr3:17112200-17137400	Weak transcription	Brain Germinal Matrix	brain
11	chr3:17112600-17123000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:17112600-17124000	Weak transcription	Fetal Intestine Large	intestine
13	chr3:17112600-17124600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr3:17112600-17126000	Weak transcription	Fetal Brain Female	brain
15	chr3:17112600-17127800	Weak transcription	Fetal Lung	lung
16	chr3:17112600-17129600	Weak transcription	Brain Angular Gyrus	brain
17	chr3:17112600-17130200	Weak transcription	Brain Anterior Caudate	brain
18	chr3:17112600-17135800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr3:17112800-17131200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr3:17112800-17135200	Weak transcription	Fetal Brain Male	brain
21	chr3:17114400-17126800	Strong transcription	Primary B cells from cord blood	blood
22	chr3:17114400-17131600	Weak transcription	Colonic Mucosa	Colon
23	chr3:17116400-17122200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr3:17116400-17122400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr3:17116400-17122800	Weak transcription	Fetal Thymus	thymus
26	chr3:17116600-17122800	Strong transcription	Primary T cells from cord blood	blood
27	chr3:17116800-17126000	Weak transcription	Dnd41	blood
28	chr3:17116800-17130200	Weak transcription	Thymus	Thymus
29	chr3:17117400-17125000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr3:17117400-17127600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr3:17117800-17122600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr3:17117800-17127600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr3:17117800-17128000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr3:17118400-17126800	Strong transcription	Primary B cells from peripheral blood	blood
35	chr3:17118600-17126800	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr3:17119000-17122800	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr3:17119200-17123200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr3:17119200-17126800	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr3:17119400-17122200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr3:17119600-17122200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr3:17119600-17122200	Weak transcription	Fetal Heart	heart
42	chr3:17119600-17122200	Weak transcription	GM12878-XiMat	blood
43	chr3:17119600-17122600	Weak transcription	Fetal Muscle Leg	muscle
44	chr3:17119600-17122600	Weak transcription	Left Ventricle	heart
45	chr3:17119600-17123600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr3:17119600-17125600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr3:17119800-17124800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:17120000-17125800	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr3:17120200-17122400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr3:17120400-17122800	Strong transcription	Spleen	Spleen

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