Variant report

Variant	rs17272789
Chromosome Location	chr3:17074281-17074282
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17067604..17070878-chr3:17071956..17074432,3	K562	blood:
2	chr3:16642885..16643423-chr3:17073610..17074546,2	K562	blood:
3	chr3:16642821..16643372-chr3:17073567..17074539,2	MCF-7	breast:
4	chr3:16642690..16643585-chr3:17073637..17074419,4	MCF-7	breast:
5	chr3:17061938..17064281-chr3:17072645..17075363,2	K562	blood:
6	chr3:16875499..16876432-chr3:17073651..17074550,5	MCF-7	breast:
7	chr3:17070050..17072867-chr3:17074097..17076055,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11549705	0.85[CEU][hapmap]
rs4452307	0.85[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56386177	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57955299	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61413357	0.91[EUR][1000 genomes]
rs62245974	1.00[ASN][1000 genomes]
rs6442662	1.00[ASN][1000 genomes]
rs6765761	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772001	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs6772050	0.85[CEU][hapmap]
rs6773420	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6798989	0.83[EUR][1000 genomes]
rs73145323	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73146928	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151352	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151357	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153248	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153264	0.93[EUR][1000 genomes]
rs73816262	1.00[ASN][1000 genomes]
rs7614547	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649318	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822682	0.85[CEU][hapmap]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17051600-17075000	Weak transcription	Fetal Brain Male	brain
2	chr3:17053600-17076200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:17053600-17080600	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:17053800-17086800	Weak transcription	Fetal Stomach	stomach
5	chr3:17055000-17077000	Weak transcription	Fetal Brain Female	brain
6	chr3:17055400-17088800	Weak transcription	Thymus	Thymus
7	chr3:17055600-17079800	Weak transcription	Small Intestine	intestine
8	chr3:17055800-17087800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:17057400-17076200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr3:17057600-17080600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr3:17058600-17077000	Weak transcription	Right Ventricle	heart
12	chr3:17058600-17082400	Weak transcription	Fetal Intestine Large	intestine
13	chr3:17060000-17074600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:17060000-17082200	Weak transcription	Fetal Intestine Small	intestine
15	chr3:17060000-17088600	Weak transcription	Pancreas	Pancrea
16	chr3:17060200-17081000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr3:17065600-17081200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr3:17066600-17075600	Weak transcription	Left Ventricle	heart
19	chr3:17069400-17085600	Weak transcription	Aorta	Aorta
20	chr3:17069600-17080800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:17070000-17093600	Weak transcription	Fetal Lung	lung
22	chr3:17071000-17074400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:17071400-17075000	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr3:17071400-17079800	Weak transcription	Lung	lung
25	chr3:17071400-17080600	Weak transcription	Gastric	stomach
26	chr3:17071600-17075600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr3:17071800-17080600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr3:17072200-17079800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr3:17072600-17074400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr3:17072600-17075000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr3:17072800-17076200	Weak transcription	Primary B cells from peripheral blood	blood
32	chr3:17072800-17080200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr3:17072800-17080600	Weak transcription	Esophagus	oesophagus
34	chr3:17072800-17085600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr3:17073000-17075000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr3:17073000-17075200	Weak transcription	Fetal Thymus	thymus
37	chr3:17073000-17077200	Weak transcription	Ovary	ovary
38	chr3:17073000-17078400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr3:17073000-17080200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr3:17073000-17088800	Weak transcription	Right Atrium	heart
41	chr3:17073000-17093000	Weak transcription	Spleen	Spleen
42	chr3:17073200-17074800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr3:17073200-17075200	Weak transcription	GM12878-XiMat	blood
44	chr3:17073200-17076400	Weak transcription	Psoas Muscle	Psoas
45	chr3:17073200-17077000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:17073200-17080600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr3:17073200-17085200	Weak transcription	Placenta	Placenta
48	chr3:17073200-17085400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr3:17073400-17074400	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr3:17073600-17074400	Enhancers	A549	lung

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