Variant report

Variant	rs7614547
Chromosome Location	chr3:16956278-16956279
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:16946510..16948646-chr3:16954860..16957312,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17272789	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4452307	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56386177	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57955299	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62245974	1.00[ASN][1000 genomes]
rs6442662	1.00[ASN][1000 genomes]
rs6765761	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773420	1.00[ASN][1000 genomes]
rs6798989	0.95[EUR][1000 genomes]
rs73145323	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73146928	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151352	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151357	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153248	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153264	0.81[EUR][1000 genomes]
rs73816262	1.00[ASN][1000 genomes]
rs7649318	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:16940800-16962200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:16941800-16959400	Enhancers	Primary B cells from peripheral blood	blood
3	chr3:16946200-16959000	Weak transcription	Aorta	Aorta
4	chr3:16949000-16965400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr3:16949200-16958400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:16949200-16958400	Weak transcription	Adipose Nuclei	Adipose
7	chr3:16949200-16958400	Weak transcription	Gastric	stomach
8	chr3:16949200-16958800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:16949200-16961200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr3:16949400-16958400	Weak transcription	Stomach Mucosa	stomach
11	chr3:16949800-16958400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:16950000-16958600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:16950200-16957000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr3:16951800-16969200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr3:16952000-16957200	Weak transcription	Right Atrium	heart
16	chr3:16952000-16958400	Weak transcription	Pancreas	Pancrea
17	chr3:16952600-16957600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:16952800-16964600	Weak transcription	Ovary	ovary
19	chr3:16953800-16958200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:16953800-16960400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:16954400-16957200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:16954400-16957200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr3:16954400-16958400	Weak transcription	NHDF-Ad	bronchial
24	chr3:16954600-16956400	Weak transcription	Liver	Liver
25	chr3:16954600-16957200	Weak transcription	Small Intestine	intestine
26	chr3:16954600-16957800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr3:16954600-16958400	Weak transcription	Spleen	Spleen
28	chr3:16954800-16956600	Weak transcription	Primary T cells from cord blood	blood
29	chr3:16954800-16957000	Weak transcription	Brain Anterior Caudate	brain
30	chr3:16954800-16957200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr3:16954800-16957200	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr3:16954800-16957400	Weak transcription	Psoas Muscle	Psoas
33	chr3:16954800-16957800	Enhancers	Primary B cells from cord blood	blood
34	chr3:16954800-16958400	Weak transcription	Brain Hippocampus Middle	brain
35	chr3:16954800-16958400	Weak transcription	Right Ventricle	heart
36	chr3:16954800-16958400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr3:16954800-16965400	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr3:16955000-16956800	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr3:16955000-16957200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr3:16955000-16966000	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr3:16955600-16956400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr3:16955600-16956400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr3:16955600-16956400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr3:16955600-16956400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr3:16955600-16956800	Weak transcription	Fetal Heart	heart
46	chr3:16955600-16961600	Enhancers	GM12878-XiMat	blood
47	chr3:16955800-16956400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr3:16955800-16956800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr3:16956000-16961600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr3:16956200-16956600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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