Variant report

Variant	rs73153264
Chromosome Location	chr3:17065240-17065241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17062689..17065902-chr3:17067342..17070886,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17272789	0.93[EUR][1000 genomes]
rs4452307	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56386177	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57955299	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61413357	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6442662	0.94[AFR][1000 genomes]
rs6765761	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6773420	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73145323	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73151352	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73151357	0.93[EUR][1000 genomes]
rs73153248	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7614547	0.81[EUR][1000 genomes]
rs7649318	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17051600-17075000	Weak transcription	Fetal Brain Male	brain
2	chr3:17053200-17069000	Weak transcription	Aorta	Aorta
3	chr3:17053200-17069000	Weak transcription	Fetal Lung	lung
4	chr3:17053400-17072600	Weak transcription	Ovary	ovary
5	chr3:17053600-17071000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:17053600-17076200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:17053600-17080600	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:17053800-17068400	Weak transcription	Adipose Nuclei	Adipose
9	chr3:17053800-17086800	Weak transcription	Fetal Stomach	stomach
10	chr3:17055000-17066200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:17055000-17077000	Weak transcription	Fetal Brain Female	brain
12	chr3:17055200-17072000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:17055400-17070600	Weak transcription	Gastric	stomach
14	chr3:17055400-17074200	Weak transcription	Brain Anterior Caudate	brain
15	chr3:17055400-17088800	Weak transcription	Thymus	Thymus
16	chr3:17055600-17079800	Weak transcription	Small Intestine	intestine
17	chr3:17055800-17087800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr3:17057200-17066800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr3:17057400-17068400	Weak transcription	Liver	Liver
20	chr3:17057400-17076200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr3:17057600-17080600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr3:17058200-17066000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:17058200-17074000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr3:17058600-17071600	Weak transcription	Fetal Heart	heart
25	chr3:17058600-17077000	Weak transcription	Right Ventricle	heart
26	chr3:17058600-17082400	Weak transcription	Fetal Intestine Large	intestine
27	chr3:17059800-17073000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr3:17060000-17066200	Weak transcription	Left Ventricle	heart
29	chr3:17060000-17069000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr3:17060000-17069000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr3:17060000-17069000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr3:17060000-17070200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr3:17060000-17072800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr3:17060000-17074600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr3:17060000-17082200	Weak transcription	Fetal Intestine Small	intestine
36	chr3:17060000-17088600	Weak transcription	Pancreas	Pancrea
37	chr3:17060200-17081000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr3:17061800-17073200	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr3:17062400-17065400	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr3:17062800-17066000	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr3:17062800-17066400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr3:17062800-17066600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr3:17062800-17066800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr3:17063200-17065600	Genic enhancers	Primary T cells from cord blood	blood
45	chr3:17063400-17065800	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr3:17063600-17068600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr3:17064000-17065800	Genic enhancers	Primary T cells fromperipheralblood	blood
48	chr3:17064000-17066600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr3:17064400-17066000	Strong transcription	Placenta	Placenta
50	chr3:17064400-17066600	Enhancers	Psoas Muscle	Psoas

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