Variant report

Variant	rs6773420
Chromosome Location	chr3:17117061-17117062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17110502..17112768-chr3:17117008..17119386,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11549705	0.88[EUR][1000 genomes]
rs17272789	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4452307	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56386177	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57955299	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60043409	0.83[EUR][1000 genomes]
rs61413357	0.81[EUR][1000 genomes]
rs62245974	1.00[ASN][1000 genomes]
rs6442662	1.00[ASN][1000 genomes]
rs6765761	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772001	0.92[EUR][1000 genomes]
rs6772050	0.89[EUR][1000 genomes]
rs6791174	0.88[EUR][1000 genomes]
rs73145323	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73146928	1.00[ASN][1000 genomes]
rs73151352	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151357	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153248	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153264	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73816262	1.00[ASN][1000 genomes]
rs7614547	1.00[ASN][1000 genomes]
rs7649318	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822682	0.88[EUR][1000 genomes]
rs9841482	0.88[EUR][1000 genomes]
rs9868443	0.83[EUR][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17089400-17135000	Weak transcription	Pancreas	Pancrea
2	chr3:17095400-17120600	Weak transcription	Aorta	Aorta
3	chr3:17095400-17120600	Weak transcription	Lung	lung
4	chr3:17096600-17118000	Weak transcription	Fetal Intestine Small	intestine
5	chr3:17097600-17120400	Weak transcription	Spleen	Spleen
6	chr3:17103400-17134400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr3:17106800-17118200	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr3:17107000-17133400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:17107200-17126200	Weak transcription	Fetal Kidney	kidney
10	chr3:17107600-17122800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr3:17108200-17120600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr3:17108600-17118600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:17109800-17120800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:17110800-17132200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:17111400-17129400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:17111800-17130600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:17112000-17132000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr3:17112200-17118600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr3:17112200-17137400	Weak transcription	Brain Germinal Matrix	brain
20	chr3:17112400-17118400	Weak transcription	Right Atrium	heart
21	chr3:17112600-17118000	Weak transcription	Psoas Muscle	Psoas
22	chr3:17112600-17118600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:17112600-17118600	Weak transcription	Fetal Heart	heart
24	chr3:17112600-17120600	Weak transcription	Gastric	stomach
25	chr3:17112600-17120600	Weak transcription	Ovary	ovary
26	chr3:17112600-17120800	Weak transcription	Adipose Nuclei	Adipose
27	chr3:17112600-17123000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:17112600-17124000	Weak transcription	Fetal Intestine Large	intestine
29	chr3:17112600-17124600	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr3:17112600-17126000	Weak transcription	Fetal Brain Female	brain
31	chr3:17112600-17127800	Weak transcription	Fetal Lung	lung
32	chr3:17112600-17129600	Weak transcription	Brain Angular Gyrus	brain
33	chr3:17112600-17130200	Weak transcription	Brain Anterior Caudate	brain
34	chr3:17112600-17135800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr3:17112800-17117200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr3:17112800-17117400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr3:17112800-17118000	Weak transcription	Left Ventricle	heart
38	chr3:17112800-17118200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr3:17112800-17118400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr3:17112800-17118400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr3:17112800-17119600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr3:17112800-17119800	Weak transcription	Fetal Stomach	stomach
43	chr3:17112800-17131200	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr3:17112800-17135200	Weak transcription	Fetal Brain Male	brain
45	chr3:17114200-17117400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr3:17114400-17117800	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr3:17114400-17126800	Strong transcription	Primary B cells from cord blood	blood
48	chr3:17114400-17131600	Weak transcription	Colonic Mucosa	Colon
49	chr3:17114600-17117400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr3:17115000-17117400	Genic enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links