Variant report

Variant	rs73153248
Chromosome Location	chr3:17053985-17053986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17272789	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4452307	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56386177	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57955299	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61413357	0.90[EUR][1000 genomes]
rs62245974	1.00[ASN][1000 genomes]
rs6442662	1.00[ASN][1000 genomes]
rs6765761	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772001	0.81[EUR][1000 genomes]
rs6773420	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6798989	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73145323	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73146928	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151352	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151357	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153264	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73816262	1.00[ASN][1000 genomes]
rs7614547	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649318	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17046800-17054200	Weak transcription	Psoas Muscle	Psoas
2	chr3:17046800-17054600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:17047000-17054200	Weak transcription	Brain Anterior Caudate	brain
4	chr3:17048200-17054200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:17048200-17054600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:17048200-17054600	Weak transcription	Gastric	stomach
7	chr3:17048200-17054600	Weak transcription	Right Atrium	heart
8	chr3:17048200-17054800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:17048400-17054000	Weak transcription	Fetal Heart	heart
10	chr3:17048400-17054600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr3:17048400-17054800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:17048400-17054800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:17048400-17054800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr3:17048400-17054800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:17048400-17054800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:17049400-17056200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:17050000-17055800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr3:17050000-17056200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr3:17050200-17054600	Weak transcription	Brain Germinal Matrix	brain
20	chr3:17050200-17056200	Weak transcription	Lung	lung
21	chr3:17050200-17059200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:17050400-17054600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:17050800-17054000	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr3:17050800-17054200	Strong transcription	GM12878-XiMat	blood
25	chr3:17050800-17054400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr3:17050800-17060200	Strong transcription	Primary hematopoietic stem cells	blood
27	chr3:17050800-17061000	Strong transcription	Primary B cells from cord blood	blood
28	chr3:17051000-17060000	Strong transcription	Primary B cells from peripheral blood	blood
29	chr3:17051200-17054000	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr3:17051200-17054800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr3:17051200-17054800	Strong transcription	Placenta	Placenta
32	chr3:17051200-17055600	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr3:17051200-17055800	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr3:17051200-17060000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:17051200-17060200	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr3:17051200-17060800	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr3:17051400-17054000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr3:17051400-17054600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr3:17051400-17055200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr3:17051400-17058600	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr3:17051600-17063000	Weak transcription	HUVEC	blood vessel
42	chr3:17051600-17075000	Weak transcription	Fetal Brain Male	brain
43	chr3:17051800-17054400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr3:17052200-17054000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
45	chr3:17052800-17056400	Weak transcription	Fetal Kidney	kidney
46	chr3:17053000-17055400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr3:17053000-17055600	Enhancers	Pancreas	Pancrea
48	chr3:17053200-17054200	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr3:17053200-17056000	Enhancers	Liver	Liver
50	chr3:17053200-17062800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links