The 2.0 version of rSNPBase

Variant report

Variant rs62245974
Chromosome Location chr3:16976888-16976889
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:16958000-16981800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
2 chr3:16959400-16986600 Weak transcription Aorta Aorta
3 chr3:16965000-16979000 Weak transcription Lung lung
4 chr3:16967000-16985000 Enhancers Primary T helper cells fromperipheralblood blood
5 chr3:16967600-16977200 Weak transcription iPS-18 Cell Line embryonic stem cell
6 chr3:16967800-16977800 Weak transcription Primary neutrophils fromperipheralblood blood
7 chr3:16969000-16977400 Enhancers Primary T helper naive cells fromperipheralblood blood
8 chr3:16969600-16977400 Weak transcription Fetal Thymus thymus
9 chr3:16970000-16977000 Weak transcription Primary T regulatory cells fromperipheralblood blood
10 chr3:16970400-16977400 Weak transcription Thymus Thymus
11 chr3:16970800-16977000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
12 chr3:16971600-16982400 Weak transcription Fetal Adrenal Gland Adrenal Gland
13 chr3:16972000-16977600 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr3:16972200-16977200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr3:16972400-16983600 Weak transcription Brain Angular Gyrus brain
16 chr3:16973400-16980400 Enhancers Primary T killer naive cells fromperipheralblood blood
17 chr3:16973600-16977000 Weak transcription Primary hematopoietic stem cells short term culture blood
18 chr3:16973800-16985000 Enhancers Primary T helper naive cells from peripheral blood blood
19 chr3:16974000-16978200 Weak transcription Pancreatic Islets Pancreatic Islet
20 chr3:16974200-16977200 Weak transcription Dnd41 blood
21 chr3:16974200-16982600 Enhancers Fetal Heart heart
22 chr3:16974600-16977400 Enhancers Primary T helper cells PMA-I stimulated --
23 chr3:16974800-16977000 Weak transcription Monocytes-CD14+_RO01746 blood
24 chr3:16974800-16977400 Weak transcription Primary B cells from peripheral blood blood
25 chr3:16974800-16984800 Weak transcription Stomach Mucosa stomach
26 chr3:16975000-16977200 Weak transcription Primary monocytes fromperipheralblood blood
27 chr3:16975000-16977400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr3:16975200-16977200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr3:16975400-16977600 Enhancers Skeletal Muscle Female skeletal muscle
30 chr3:16975400-16978800 Enhancers Primary T helper 17 cells PMA-I stimulated --
31 chr3:16975600-16985000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
32 chr3:16975600-16985800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
33 chr3:16975800-16985000 Enhancers Primary T killer memory cells from peripheral blood blood
34 chr3:16976000-16977400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
35 chr3:16976000-16983800 Weak transcription Pancreas Pancrea
36 chr3:16976200-16977400 Weak transcription Ovary ovary
37 chr3:16976200-16977400 Weak transcription Psoas Muscle Psoas
38 chr3:16976200-16977600 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr3:16976200-16981400 Weak transcription Right Atrium heart
40 chr3:16976400-16977400 Weak transcription H9 Cell Line embryonic stem cell
41 chr3:16976400-16977600 Enhancers Primary T cells from cord blood blood
42 chr3:16976400-16977800 Weak transcription Primary T cells fromperipheralblood blood
43 chr3:16976400-16977800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
44 chr3:16976400-16977800 Weak transcription Left Ventricle heart
45 chr3:16976400-16978200 Weak transcription Primary B cells from cord blood blood
46 chr3:16976400-16982400 Weak transcription Right Ventricle heart
47 chr3:16976400-16982400 Weak transcription Spleen Spleen
48 chr3:16976400-16983800 Weak transcription Gastric stomach
49 chr3:16976600-16977000 Weak transcription Adipose Nuclei Adipose
50 chr3:16976600-16977000 Weak transcription GM12878-XiMat blood

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Last update: Aug 31, 2015