Variant report

Variant	rs57955299
Chromosome Location	chr3:17098761-17098762
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17272789	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4452307	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56386177	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61413357	0.93[EUR][1000 genomes]
rs62245974	1.00[ASN][1000 genomes]
rs6442662	1.00[ASN][1000 genomes]
rs6765761	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772001	0.81[EUR][1000 genomes]
rs6773420	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6798989	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73145323	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73146928	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151357	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153248	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153264	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73816262	1.00[ASN][1000 genomes]
rs7614547	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649318	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17081200-17111400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:17083000-17109600	Weak transcription	Fetal Intestine Large	intestine
3	chr3:17083200-17111600	Weak transcription	Stomach Mucosa	stomach
4	chr3:17085800-17112200	Weak transcription	Gastric	stomach
5	chr3:17089400-17109000	Weak transcription	Dnd41	blood
6	chr3:17089400-17135000	Weak transcription	Pancreas	Pancrea
7	chr3:17089600-17111000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:17089800-17110400	Weak transcription	Fetal Thymus	thymus
9	chr3:17089800-17112200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr3:17089800-17116000	Weak transcription	Thymus	Thymus
11	chr3:17090400-17110400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr3:17090600-17110400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr3:17091600-17103800	Strong transcription	Primary T cells from cord blood	blood
14	chr3:17092000-17109200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr3:17092200-17109000	Weak transcription	Liver	Liver
16	chr3:17094800-17101400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:17094800-17112200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr3:17095000-17112000	Weak transcription	Right Atrium	heart
19	chr3:17095200-17098800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:17095200-17101800	Strong transcription	Primary B cells from cord blood	blood
21	chr3:17095200-17112200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr3:17095400-17099000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:17095400-17106800	Weak transcription	Fetal Kidney	kidney
24	chr3:17095400-17108800	Weak transcription	Primary hematopoietic stem cells	blood
25	chr3:17095400-17109000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr3:17095400-17109000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr3:17095400-17110200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr3:17095400-17114400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr3:17095400-17120600	Weak transcription	Aorta	Aorta
30	chr3:17095400-17120600	Weak transcription	Lung	lung
31	chr3:17095800-17099000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr3:17095800-17099800	Enhancers	NHDF-Ad	bronchial
33	chr3:17095800-17111600	Weak transcription	Brain Germinal Matrix	brain
34	chr3:17096000-17098800	Enhancers	NHLF	lung
35	chr3:17096000-17100200	Enhancers	Fetal Heart	heart
36	chr3:17096200-17102000	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr3:17096400-17098800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:17096400-17099200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr3:17096400-17099400	Enhancers	Osteobl	bone
40	chr3:17096400-17102000	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr3:17096600-17099400	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr3:17096600-17118000	Weak transcription	Fetal Intestine Small	intestine
43	chr3:17096800-17099000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr3:17097000-17101600	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr3:17097000-17109000	Weak transcription	Adipose Nuclei	Adipose
46	chr3:17097200-17108200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr3:17097200-17109200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr3:17097200-17112000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr3:17097200-17112000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr3:17097200-17113600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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