Variant report

Variant	rs7649318
Chromosome Location	chr3:17076971-17076972
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17070807..17073673-chr3:17074313..17077008,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17272789	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4452307	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56386177	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57955299	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61413357	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs62245974	1.00[ASN][1000 genomes]
rs6442662	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6765761	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772001	0.81[EUR][1000 genomes]
rs6773420	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6798989	0.82[EUR][1000 genomes]
rs73145323	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73146928	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151352	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151357	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153248	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153264	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73816262	1.00[ASN][1000 genomes]
rs7614547	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17053600-17080600	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:17053800-17086800	Weak transcription	Fetal Stomach	stomach
3	chr3:17055000-17077000	Weak transcription	Fetal Brain Female	brain
4	chr3:17055400-17088800	Weak transcription	Thymus	Thymus
5	chr3:17055600-17079800	Weak transcription	Small Intestine	intestine
6	chr3:17055800-17087800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:17057600-17080600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr3:17058600-17077000	Weak transcription	Right Ventricle	heart
9	chr3:17058600-17082400	Weak transcription	Fetal Intestine Large	intestine
10	chr3:17060000-17082200	Weak transcription	Fetal Intestine Small	intestine
11	chr3:17060000-17088600	Weak transcription	Pancreas	Pancrea
12	chr3:17060200-17081000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr3:17065600-17081200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:17069400-17085600	Weak transcription	Aorta	Aorta
15	chr3:17069600-17080800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:17070000-17093600	Weak transcription	Fetal Lung	lung
17	chr3:17071400-17079800	Weak transcription	Lung	lung
18	chr3:17071400-17080600	Weak transcription	Gastric	stomach
19	chr3:17071800-17080600	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr3:17072200-17079800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr3:17072800-17080200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr3:17072800-17080600	Weak transcription	Esophagus	oesophagus
23	chr3:17072800-17085600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr3:17073000-17077200	Weak transcription	Ovary	ovary
25	chr3:17073000-17078400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr3:17073000-17080200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr3:17073000-17088800	Weak transcription	Right Atrium	heart
28	chr3:17073000-17093000	Weak transcription	Spleen	Spleen
29	chr3:17073200-17077000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr3:17073200-17080600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr3:17073200-17085200	Weak transcription	Placenta	Placenta
32	chr3:17073200-17085400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr3:17074000-17077000	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr3:17074000-17077200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr3:17074000-17077200	Enhancers	Fetal Heart	heart
36	chr3:17074000-17077400	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr3:17074000-17084400	Weak transcription	Liver	Liver
38	chr3:17074200-17077400	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr3:17074400-17078800	Weak transcription	Stomach Mucosa	stomach
40	chr3:17074400-17079800	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr3:17074800-17077600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr3:17074800-17080600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr3:17075000-17077200	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr3:17075000-17077800	Enhancers	Primary hematopoietic stem cells	blood
45	chr3:17075000-17077800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr3:17075000-17079800	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr3:17075200-17077000	Enhancers	Fetal Thymus	thymus
48	chr3:17075400-17080400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr3:17075600-17077200	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr3:17075600-17078800	Enhancers	Left Ventricle	heart

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