Variant report

Variant	rs61413357
Chromosome Location	chr3:17070859-17070860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17067604..17070878-chr3:17071956..17074432,3	K562	blood:
2	chr3:17062689..17065902-chr3:17067342..17070886,3	MCF-7	breast:
3	chr3:17070050..17072867-chr3:17074097..17076055,2	MCF-7	breast:
4	chr3:17070807..17073673-chr3:17074313..17077008,2	K562	blood:

rs_ID	r²[population]
rs17272789	0.91[EUR][1000 genomes]
rs4452307	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs56386177	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs57955299	0.93[EUR][1000 genomes]
rs6442662	0.98[AFR][1000 genomes]
rs6765761	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6773420	0.81[EUR][1000 genomes]
rs73145323	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73151352	0.93[EUR][1000 genomes]
rs73151357	0.91[EUR][1000 genomes]
rs73153248	0.90[EUR][1000 genomes]
rs73153264	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7649318	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17051600-17075000	Weak transcription	Fetal Brain Male	brain
2	chr3:17053400-17072600	Weak transcription	Ovary	ovary
3	chr3:17053600-17071000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:17053600-17076200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:17053600-17080600	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:17053800-17086800	Weak transcription	Fetal Stomach	stomach
7	chr3:17055000-17077000	Weak transcription	Fetal Brain Female	brain
8	chr3:17055200-17072000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:17055400-17074200	Weak transcription	Brain Anterior Caudate	brain
10	chr3:17055400-17088800	Weak transcription	Thymus	Thymus
11	chr3:17055600-17079800	Weak transcription	Small Intestine	intestine
12	chr3:17055800-17087800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr3:17057400-17076200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr3:17057600-17080600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr3:17058200-17074000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr3:17058600-17071600	Weak transcription	Fetal Heart	heart
17	chr3:17058600-17077000	Weak transcription	Right Ventricle	heart
18	chr3:17058600-17082400	Weak transcription	Fetal Intestine Large	intestine
19	chr3:17059800-17073000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr3:17060000-17072800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr3:17060000-17074600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr3:17060000-17082200	Weak transcription	Fetal Intestine Small	intestine
23	chr3:17060000-17088600	Weak transcription	Pancreas	Pancrea
24	chr3:17060200-17081000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr3:17061800-17073200	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr3:17064600-17071400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:17064800-17071000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:17064800-17071400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr3:17064800-17071400	Weak transcription	Spleen	Spleen
30	chr3:17065000-17071200	Weak transcription	Stomach Mucosa	stomach
31	chr3:17065600-17071000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr3:17065600-17081200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr3:17065800-17071000	Weak transcription	GM12878-XiMat	blood
34	chr3:17066000-17071000	Weak transcription	Placenta	Placenta
35	chr3:17066000-17072000	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr3:17066400-17072000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:17066600-17072600	Weak transcription	Psoas Muscle	Psoas
38	chr3:17066600-17075600	Weak transcription	Left Ventricle	heart
39	chr3:17067800-17071000	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr3:17069000-17073200	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr3:17069200-17071200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr3:17069200-17072400	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr3:17069400-17072600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:17069400-17085600	Weak transcription	Aorta	Aorta
45	chr3:17069600-17071000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr3:17069600-17072600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr3:17069600-17080800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:17069800-17071800	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr3:17069800-17073000	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr3:17069800-17073200	Weak transcription	Fetal Kidney	kidney

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