Variant report

Variant	rs56386177
Chromosome Location	chr3:17084057-17084058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17077235..17080133-chr3:17081662..17084090,3	K562	blood:
2	chr3:17077235..17079124-chr3:17082196..17084090,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17272789	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4452307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57955299	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61413357	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs62245974	1.00[ASN][1000 genomes]
rs6442662	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6765761	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772001	0.81[EUR][1000 genomes]
rs6773420	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6798989	0.82[EUR][1000 genomes]
rs73145323	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73146928	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151352	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151357	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153248	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153264	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73816262	1.00[ASN][1000 genomes]
rs7614547	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649318	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17053800-17086800	Weak transcription	Fetal Stomach	stomach
2	chr3:17055400-17088800	Weak transcription	Thymus	Thymus
3	chr3:17055800-17087800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:17060000-17088600	Weak transcription	Pancreas	Pancrea
5	chr3:17069400-17085600	Weak transcription	Aorta	Aorta
6	chr3:17070000-17093600	Weak transcription	Fetal Lung	lung
7	chr3:17072800-17085600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr3:17073000-17088800	Weak transcription	Right Atrium	heart
9	chr3:17073000-17093000	Weak transcription	Spleen	Spleen
10	chr3:17073200-17085200	Weak transcription	Placenta	Placenta
11	chr3:17073200-17085400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr3:17074000-17084400	Weak transcription	Liver	Liver
13	chr3:17076400-17085600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr3:17076600-17086800	Weak transcription	Dnd41	blood
15	chr3:17076800-17085200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr3:17077000-17086800	Weak transcription	Fetal Thymus	thymus
17	chr3:17077400-17084200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr3:17077400-17085600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr3:17077400-17094600	Weak transcription	Psoas Muscle	Psoas
20	chr3:17077800-17086800	Weak transcription	Ovary	ovary
21	chr3:17079800-17090000	Strong transcription	Primary B cells from cord blood	blood
22	chr3:17080800-17090200	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:17081000-17084200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr3:17081000-17084600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr3:17081000-17085600	Weak transcription	Esophagus	oesophagus
26	chr3:17081000-17085600	Weak transcription	Gastric	stomach
27	chr3:17081000-17088800	Weak transcription	Lung	lung
28	chr3:17081200-17084400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:17081200-17087200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr3:17081200-17111400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr3:17081400-17084200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr3:17081400-17085400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr3:17081400-17085400	Weak transcription	Adipose Nuclei	Adipose
34	chr3:17081400-17087400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr3:17081600-17087200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr3:17081600-17090000	Strong transcription	Primary T cells from cord blood	blood
37	chr3:17081600-17090200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr3:17081800-17090000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr3:17082200-17084200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr3:17082200-17085600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr3:17082200-17086800	Weak transcription	Small Intestine	intestine
42	chr3:17082200-17087200	Weak transcription	Colonic Mucosa	Colon
43	chr3:17082200-17089800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr3:17082400-17085600	Weak transcription	Right Ventricle	heart
45	chr3:17082400-17085800	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr3:17082400-17090200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr3:17082400-17092800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr3:17082600-17084800	Weak transcription	GM12878-XiMat	blood
49	chr3:17082600-17085600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr3:17082600-17085600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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