Variant report

Variant	rs9841482
Chromosome Location	chr3:17129836-17129837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11549705	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60043409	0.94[EUR][1000 genomes]
rs6772001	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772050	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773420	0.88[EUR][1000 genomes]
rs6791174	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822682	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868443	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv819815	chr3:17124088-17131754	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	n/a

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17089400-17135000	Weak transcription	Pancreas	Pancrea
2	chr3:17103400-17134400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr3:17107000-17133400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:17110800-17132200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:17111800-17130600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:17112000-17132000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:17112200-17137400	Weak transcription	Brain Germinal Matrix	brain
8	chr3:17112600-17130200	Weak transcription	Brain Anterior Caudate	brain
9	chr3:17112600-17135800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:17112800-17131200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr3:17112800-17135200	Weak transcription	Fetal Brain Male	brain
12	chr3:17114400-17131600	Weak transcription	Colonic Mucosa	Colon
13	chr3:17116800-17130200	Weak transcription	Thymus	Thymus
14	chr3:17120400-17133400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr3:17120400-17135000	Weak transcription	HUVEC	blood vessel
16	chr3:17121000-17134400	Weak transcription	Gastric	stomach
17	chr3:17121600-17132200	Weak transcription	Fetal Stomach	stomach
18	chr3:17122800-17131200	Weak transcription	Spleen	Spleen
19	chr3:17122800-17136000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:17123000-17130000	Weak transcription	Adipose Nuclei	Adipose
21	chr3:17123000-17130200	Weak transcription	Placenta	Placenta
22	chr3:17123000-17130600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr3:17123000-17131200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr3:17123200-17130200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr3:17123200-17132200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr3:17124600-17131200	Weak transcription	Fetal Intestine Large	intestine
27	chr3:17125000-17130600	Weak transcription	Esophagus	oesophagus
28	chr3:17125200-17131200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr3:17126400-17131000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:17126600-17131600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr3:17126800-17130400	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr3:17127200-17136000	Weak transcription	Fetal Intestine Small	intestine
33	chr3:17127400-17131000	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr3:17127600-17130800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr3:17127600-17131000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr3:17127600-17131200	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr3:17127600-17133800	Strong transcription	Primary B cells from cord blood	blood
38	chr3:17127800-17134200	Strong transcription	Primary B cells from peripheral blood	blood
39	chr3:17128000-17130800	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr3:17128000-17131000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr3:17128000-17131200	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr3:17128200-17132400	Enhancers	Fetal Heart	heart
43	chr3:17128400-17130400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr3:17128400-17131000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr3:17128400-17131200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:17128600-17133200	Weak transcription	GM12878-XiMat	blood
47	chr3:17128800-17130800	Enhancers	Primary T cells fromperipheralblood	blood
48	chr3:17128800-17130800	Enhancers	Dnd41	blood
49	chr3:17128800-17131200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr3:17128800-17132000	Enhancers	Right Atrium	heart

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