Variant report

Variant	rs9822682
Chromosome Location	chr3:17131210-17131211
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17109611..17112093-chr3:17130778..17133549,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11549705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17272789	0.85[CEU][hapmap]
rs17272817	1.00[CHB][hapmap]
rs4452307	0.82[MEX][hapmap]
rs60043409	0.94[EUR][1000 genomes]
rs6772001	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.84[MKK][hapmap];0.84[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773420	0.88[EUR][1000 genomes]
rs6791174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9841482	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868443	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv819815	chr3:17124088-17131754	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	n/a

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17089400-17135000	Weak transcription	Pancreas	Pancrea
2	chr3:17103400-17134400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr3:17107000-17133400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:17110800-17132200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:17112000-17132000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:17112200-17137400	Weak transcription	Brain Germinal Matrix	brain
7	chr3:17112600-17135800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:17112800-17135200	Weak transcription	Fetal Brain Male	brain
9	chr3:17114400-17131600	Weak transcription	Colonic Mucosa	Colon
10	chr3:17120400-17133400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:17120400-17135000	Weak transcription	HUVEC	blood vessel
12	chr3:17121000-17134400	Weak transcription	Gastric	stomach
13	chr3:17121600-17132200	Weak transcription	Fetal Stomach	stomach
14	chr3:17122800-17136000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:17123200-17132200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr3:17126600-17131600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr3:17127200-17136000	Weak transcription	Fetal Intestine Small	intestine
18	chr3:17127600-17133800	Strong transcription	Primary B cells from cord blood	blood
19	chr3:17127800-17134200	Strong transcription	Primary B cells from peripheral blood	blood
20	chr3:17128200-17132400	Enhancers	Fetal Heart	heart
21	chr3:17128600-17133200	Weak transcription	GM12878-XiMat	blood
22	chr3:17128800-17132000	Enhancers	Right Atrium	heart
23	chr3:17128800-17132200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:17129000-17134600	Enhancers	Psoas Muscle	Psoas
25	chr3:17129000-17141400	Weak transcription	Fetal Brain Female	brain
26	chr3:17129200-17132000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr3:17129600-17132400	Enhancers	Brain Angular Gyrus	brain
28	chr3:17129600-17132400	Enhancers	Fetal Muscle Leg	muscle
29	chr3:17129600-17134600	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr3:17130000-17131400	Enhancers	Brain Cingulate Gyrus	brain
31	chr3:17130000-17135800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr3:17130200-17131400	Enhancers	Brain Anterior Caudate	brain
33	chr3:17130200-17132000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr3:17130200-17133200	Strong transcription	Placenta	Placenta
35	chr3:17130200-17134600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr3:17130400-17131400	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr3:17130400-17131800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr3:17130400-17132000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr3:17130400-17132400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr3:17130400-17133800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr3:17130400-17134200	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr3:17130400-17143400	Weak transcription	Thymus	Thymus
43	chr3:17130600-17131600	Enhancers	Brain Substantia Nigra	brain
44	chr3:17130600-17131800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr3:17130600-17135400	Weak transcription	Fetal Thymus	thymus
46	chr3:17130800-17131400	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr3:17130800-17131400	Weak transcription	Adipose Nuclei	Adipose
48	chr3:17130800-17131800	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr3:17130800-17131800	Weak transcription	Aorta	Aorta
50	chr3:17130800-17131800	Enhancers	Skeletal Muscle Female	skeletal muscle

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