Variant report

Variant	rs9845551
Chromosome Location	chr3:17040360-17040361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17039629..17042564-chr3:17044949..17047142,2	MCF-7	breast:
2	chr3:17035509..17037712-chr3:17038377..17040879,2	K562	blood:
3	chr3:17039544..17041454-chr3:17044193..17046308,3	K562	blood:
4	chr3:17040139..17042638-chr3:17051361..17054318,2	K562	blood:
5	chr3:17039544..17042742-chr3:17044193..17046929,5	K562	blood:

Variant related genes	Relation type
ENSG00000154822	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12233493	0.98[EUR][1000 genomes]
rs13072853	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17042926	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17272754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs28498854	0.98[ASN][1000 genomes]
rs34053933	0.93[ASN][1000 genomes]
rs34126040	0.93[ASN][1000 genomes]
rs35941157	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4130495	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4452307	0.84[YRI][hapmap]
rs58855245	0.93[ASN][1000 genomes]
rs59256854	0.93[ASN][1000 genomes]
rs6442659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6442662	0.84[YRI][hapmap]
rs6769249	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6775782	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6778233	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6796868	0.82[ASW][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.84[TSI][hapmap];0.84[YRI][hapmap]
rs6805550	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7612924	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7645276	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9835432	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9870977	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9876768	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9881997	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17026800-17041200	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr3:17029400-17042200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:17031800-17041200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr3:17034400-17044800	Weak transcription	Aorta	Aorta
5	chr3:17035000-17047200	Weak transcription	Ovary	ovary
6	chr3:17036000-17041600	Enhancers	Primary T cells from cord blood	blood
7	chr3:17037000-17053200	Weak transcription	Fetal Intestine Small	intestine
8	chr3:17037600-17050800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr3:17037800-17044800	Weak transcription	Thymus	Thymus
10	chr3:17038000-17040600	Weak transcription	Pancreas	Pancrea
11	chr3:17038000-17044800	Weak transcription	Right Atrium	heart
12	chr3:17038000-17044800	Weak transcription	Right Ventricle	heart
13	chr3:17038000-17044800	Weak transcription	Spleen	Spleen
14	chr3:17038000-17047800	Weak transcription	Gastric	stomach
15	chr3:17038200-17045000	Weak transcription	Psoas Muscle	Psoas
16	chr3:17038800-17041800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:17039400-17040400	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr3:17039400-17041000	Enhancers	Fetal Heart	heart
19	chr3:17039400-17041600	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr3:17039600-17040400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr3:17039600-17040400	Enhancers	Liver	Liver
22	chr3:17039600-17040400	Flanking Active TSS	GM12878-XiMat	blood
23	chr3:17039600-17040600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr3:17039600-17040800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr3:17039600-17044600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr3:17039800-17041200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:17040000-17040400	Enhancers	Brain Hippocampus Middle	brain
28	chr3:17040000-17040800	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr3:17040000-17041000	Enhancers	Adipose Nuclei	Adipose
30	chr3:17040000-17041200	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr3:17040000-17041800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr3:17040200-17040400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:17040200-17040600	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr3:17040200-17041200	Enhancers	Primary hematopoietic stem cells	blood
35	chr3:17040200-17041200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr3:17040200-17044000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr3:17040200-17051000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr3:17040200-17051200	Weak transcription	Primary monocytes fromperipheralblood	blood

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