Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17042926	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17272754	0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs28498854	0.93[ASN][1000 genomes]
rs34053933	0.98[ASN][1000 genomes]
rs34126040	0.98[ASN][1000 genomes]
rs35941157	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4130495	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs58855245	0.98[ASN][1000 genomes]
rs59256854	0.98[ASN][1000 genomes]
rs6442659	0.84[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6769249	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778233	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6796868	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs6805550	1.00[ASN][1000 genomes]
rs7645276	1.00[ASN][1000 genomes]
rs9835432	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9845551	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9858664	0.87[EUR][1000 genomes]
rs9870977	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9876768	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9881997	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv980048	chr3:16995372-17016178	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6775782	PLCL2	cis	Whole Blood	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:16987400-17005000	Weak transcription	Primary B cells from cord blood	blood
2	chr3:16987400-17015600	Weak transcription	Aorta	Aorta
3	chr3:16993400-17005200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:17000600-17008400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:17001400-17008400	Weak transcription	Primary T cells from cord blood	blood
6	chr3:17003600-17004800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr3:17003600-17005200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr3:17003600-17010200	Weak transcription	Right Ventricle	heart

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