Variant report

Variant	rs6442659
Chromosome Location	chr3:17042303-17042304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17039629..17042564-chr3:17044949..17047142,2	MCF-7	breast:
2	chr3:17040139..17042638-chr3:17051361..17054318,2	K562	blood:
3	chr3:17039544..17042742-chr3:17044193..17046929,5	K562	blood:

Variant related genes	Relation type
ENSG00000154822	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12233493	0.97[EUR][1000 genomes]
rs13072853	0.82[EUR][1000 genomes]
rs17042926	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17272754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs28498854	0.98[ASN][1000 genomes]
rs34053933	0.93[ASN][1000 genomes]
rs34126040	0.93[ASN][1000 genomes]
rs35941157	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4130495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58855245	0.93[ASN][1000 genomes]
rs59256854	0.93[ASN][1000 genomes]
rs6769249	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6775782	0.84[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6778233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6805550	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7612924	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7645276	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9835432	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9845551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870977	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9876768	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9881997	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17034400-17044800	Weak transcription	Aorta	Aorta
2	chr3:17035000-17047200	Weak transcription	Ovary	ovary
3	chr3:17037000-17053200	Weak transcription	Fetal Intestine Small	intestine
4	chr3:17037600-17050800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr3:17037800-17044800	Weak transcription	Thymus	Thymus
6	chr3:17038000-17044800	Weak transcription	Right Atrium	heart
7	chr3:17038000-17044800	Weak transcription	Right Ventricle	heart
8	chr3:17038000-17044800	Weak transcription	Spleen	Spleen
9	chr3:17038000-17047800	Weak transcription	Gastric	stomach
10	chr3:17038200-17045000	Weak transcription	Psoas Muscle	Psoas
11	chr3:17039600-17044600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:17040200-17044000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:17040200-17051000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr3:17040200-17051200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr3:17041200-17043800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr3:17041200-17044000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr3:17041200-17044800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr3:17041200-17044800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:17041200-17045400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr3:17041200-17051400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr3:17041600-17044200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr3:17041600-17044600	Weak transcription	Fetal Heart	heart
23	chr3:17041800-17045000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr3:17042000-17042800	Weak transcription	Primary B cells from cord blood	blood
25	chr3:17042200-17042400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:17042200-17043200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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