Variant report

Variant	rs7645276
Chromosome Location	chr3:17022391-17022392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12233493	0.96[EUR][1000 genomes]
rs13072853	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17042926	0.98[ASN][1000 genomes]
rs17272754	0.98[ASN][1000 genomes]
rs28498854	0.93[ASN][1000 genomes]
rs34053933	0.98[ASN][1000 genomes]
rs34126040	0.98[ASN][1000 genomes]
rs35941157	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4130495	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58855245	0.98[ASN][1000 genomes]
rs59256854	0.98[ASN][1000 genomes]
rs6442659	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6769249	1.00[ASN][1000 genomes]
rs6775782	1.00[ASN][1000 genomes]
rs6778233	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805550	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7612924	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9835432	0.93[ASN][1000 genomes]
rs9845551	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9870977	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9876768	0.93[ASN][1000 genomes]
rs9881997	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17009200-17026600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:17014800-17033600	Weak transcription	Primary T cells from cord blood	blood
3	chr3:17014800-17038800	Weak transcription	Primary B cells from cord blood	blood
4	chr3:17016200-17027200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr3:17016400-17032200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr3:17016600-17026600	Weak transcription	Fetal Heart	heart
7	chr3:17017000-17028600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:17017000-17029800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr3:17017400-17023200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr3:17017400-17026600	Weak transcription	Right Ventricle	heart
11	chr3:17017400-17027200	Weak transcription	Ovary	ovary
12	chr3:17017400-17027400	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr3:17017400-17027400	Weak transcription	Right Atrium	heart
14	chr3:17017600-17023200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr3:17018000-17023200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:17019000-17029800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr3:17019400-17023200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr3:17019400-17027200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:17019600-17022800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr3:17020400-17024000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr3:17020400-17027200	Weak transcription	Psoas Muscle	Psoas
22	chr3:17020400-17034000	Weak transcription	Small Intestine	intestine
23	chr3:17020600-17023200	Weak transcription	Adipose Nuclei	Adipose
24	chr3:17020600-17028400	Weak transcription	Liver	Liver
25	chr3:17020800-17022800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:17020800-17023800	Weak transcription	GM12878-XiMat	blood
27	chr3:17021800-17027400	Weak transcription	Left Ventricle	heart

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