Variant report

Variant	rs34126040
Chromosome Location	chr3:16988624-16988625
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:16876950..16879073-chr3:16988148..16990522,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12054464	0.91[EUR][1000 genomes]
rs12233538	0.89[EUR][1000 genomes]
rs12233541	0.90[EUR][1000 genomes]
rs13073804	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1550518	0.96[EUR][1000 genomes]
rs17042926	0.95[ASN][1000 genomes]
rs17200543	0.94[EUR][1000 genomes]
rs17272740	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs17272754	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28498854	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34053933	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34437014	0.93[EUR][1000 genomes]
rs34824028	0.80[EUR][1000 genomes]
rs35307172	0.93[EUR][1000 genomes]
rs35941157	0.98[ASN][1000 genomes]
rs4130495	0.93[ASN][1000 genomes]
rs4290789	0.81[EUR][1000 genomes]
rs55942882	0.93[EUR][1000 genomes]
rs58855245	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59256854	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62246031	0.93[EUR][1000 genomes]
rs6442659	0.93[ASN][1000 genomes]
rs6769249	0.98[ASN][1000 genomes]
rs6775782	0.98[ASN][1000 genomes]
rs6778233	0.98[ASN][1000 genomes]
rs6805550	0.98[ASN][1000 genomes]
rs7616589	0.81[EUR][1000 genomes]
rs7645276	0.98[ASN][1000 genomes]
rs9815788	0.90[EUR][1000 genomes]
rs9835432	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9845137	0.81[EUR][1000 genomes]
rs9845551	0.93[ASN][1000 genomes]
rs9870977	0.98[ASN][1000 genomes]
rs9876768	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9881997	0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34126040	PLCL2	cis	Whole Blood	GTEx

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:16978000-16991200	Weak transcription	Adipose Nuclei	Adipose
2	chr3:16979000-16990600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:16979400-16989800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr3:16984000-16992600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr3:16984200-17003400	Weak transcription	Spleen	Spleen
6	chr3:16985000-16989000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:16985000-16989400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr3:16985000-16989600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:16985000-16992400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr3:16985000-17003400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:16985600-16990600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr3:16985600-16992400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:16985600-17000400	Weak transcription	Primary T cells from cord blood	blood
14	chr3:16985800-16990800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr3:16986400-16990600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr3:16986600-17000400	Weak transcription	Left Ventricle	heart
17	chr3:16986800-17003000	Weak transcription	Ovary	ovary
18	chr3:16987400-16988800	Weak transcription	Right Atrium	heart
19	chr3:16987400-16989600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr3:16987400-16990000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr3:16987400-17005000	Weak transcription	Primary B cells from cord blood	blood
22	chr3:16987400-17015600	Weak transcription	Aorta	Aorta
23	chr3:16987600-16988800	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr3:16987600-16990800	Weak transcription	Fetal Heart	heart
25	chr3:16987800-16990600	Weak transcription	Psoas Muscle	Psoas
26	chr3:16988000-16992600	Weak transcription	GM12878-XiMat	blood
27	chr3:16988000-16993600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr3:16988400-16989000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr3:16988600-16989600	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr3:16988600-16991400	Enhancers	Primary T helper cells PMA-I stimulated	--

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