Variant report

Variant	rs34824028
Chromosome Location	chr3:17059848-17059849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17059689..17062098-chr3:17067545..17070448,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12054464	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12233493	0.97[ASN][1000 genomes]
rs12233538	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233541	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066204	0.86[EUR][1000 genomes]
rs13073804	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13083189	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085309	0.85[EUR][1000 genomes]
rs13096536	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1550518	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17042972	0.87[ASN][1000 genomes]
rs17200543	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17272740	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17272810	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17272817	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17272831	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28498854	0.97[EUR][1000 genomes]
rs28932173	0.93[ASN][1000 genomes]
rs34053933	0.87[EUR][1000 genomes]
rs34126040	0.80[EUR][1000 genomes]
rs34437014	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35100600	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35307172	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3935970	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4290789	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55942882	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56060350	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58855245	0.87[EUR][1000 genomes]
rs59256854	0.87[EUR][1000 genomes]
rs62246031	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62247182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6789069	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6796868	0.90[ASN][1000 genomes]
rs71627166	0.86[EUR][1000 genomes]
rs7616589	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652293	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7652874	0.84[EUR][1000 genomes]
rs9815788	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9834723	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9835432	0.86[EUR][1000 genomes]
rs9845137	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9858664	0.90[ASN][1000 genomes]
rs9876768	0.95[EUR][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17050800-17060200	Strong transcription	Primary hematopoietic stem cells	blood
2	chr3:17050800-17061000	Strong transcription	Primary B cells from cord blood	blood
3	chr3:17051000-17060000	Strong transcription	Primary B cells from peripheral blood	blood
4	chr3:17051200-17060000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:17051200-17060200	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr3:17051200-17060800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr3:17051600-17063000	Weak transcription	HUVEC	blood vessel
8	chr3:17051600-17075000	Weak transcription	Fetal Brain Male	brain
9	chr3:17053200-17062800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr3:17053200-17069000	Weak transcription	Aorta	Aorta
11	chr3:17053200-17069000	Weak transcription	Fetal Lung	lung
12	chr3:17053400-17072600	Weak transcription	Ovary	ovary
13	chr3:17053600-17062800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:17053600-17064400	Weak transcription	Spleen	Spleen
15	chr3:17053600-17071000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr3:17053600-17076200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr3:17053600-17080600	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:17053800-17068400	Weak transcription	Adipose Nuclei	Adipose
19	chr3:17053800-17086800	Weak transcription	Fetal Stomach	stomach
20	chr3:17055000-17060000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr3:17055000-17066200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:17055000-17077000	Weak transcription	Fetal Brain Female	brain
23	chr3:17055200-17072000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:17055400-17070600	Weak transcription	Gastric	stomach
25	chr3:17055400-17074200	Weak transcription	Brain Anterior Caudate	brain
26	chr3:17055400-17088800	Weak transcription	Thymus	Thymus
27	chr3:17055600-17060000	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr3:17055600-17079800	Weak transcription	Small Intestine	intestine
29	chr3:17055800-17087800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr3:17056000-17060800	Strong transcription	Primary T cells from cord blood	blood
31	chr3:17056200-17061000	Strong transcription	GM12878-XiMat	blood
32	chr3:17056400-17061600	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr3:17057200-17060000	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr3:17057200-17062800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr3:17057200-17066800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr3:17057400-17062800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:17057400-17062800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr3:17057400-17064000	Weak transcription	Stomach Mucosa	stomach
39	chr3:17057400-17068400	Weak transcription	Liver	Liver
40	chr3:17057400-17076200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr3:17057600-17060800	Weak transcription	Dnd41	blood
42	chr3:17057600-17080600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr3:17058000-17060000	Strong transcription	Fetal Intestine Small	intestine
44	chr3:17058000-17060000	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr3:17058200-17062400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr3:17058200-17066000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr3:17058200-17074000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr3:17058400-17062400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr3:17058400-17064400	Weak transcription	Placenta	Placenta
50	chr3:17058600-17062600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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