Variant report

Variant	rs13083189
Chromosome Location	chr3:17060203-17060204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17059689..17062098-chr3:17067545..17070448,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12054464	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12233493	0.97[ASN][1000 genomes]
rs12233538	1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12233541	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13073804	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13096536	1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1550518	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17042972	0.87[ASN][1000 genomes]
rs17200543	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17272740	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17272810	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17272817	1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17272831	1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28498854	0.85[EUR][1000 genomes]
rs28932173	0.93[ASN][1000 genomes]
rs34437014	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34824028	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35100600	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35307172	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3935970	1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4290789	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55942882	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56060350	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62246031	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62247182	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6789069	1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6796868	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7616589	1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652293	1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9815788	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9834723	1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9845137	1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9858664	0.90[ASN][1000 genomes]
rs9876768	0.84[EUR][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17050800-17061000	Strong transcription	Primary B cells from cord blood	blood
2	chr3:17051200-17060800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr3:17051600-17063000	Weak transcription	HUVEC	blood vessel
4	chr3:17051600-17075000	Weak transcription	Fetal Brain Male	brain
5	chr3:17053200-17062800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr3:17053200-17069000	Weak transcription	Aorta	Aorta
7	chr3:17053200-17069000	Weak transcription	Fetal Lung	lung
8	chr3:17053400-17072600	Weak transcription	Ovary	ovary
9	chr3:17053600-17062800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:17053600-17064400	Weak transcription	Spleen	Spleen
11	chr3:17053600-17071000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:17053600-17076200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr3:17053600-17080600	Weak transcription	Fetal Muscle Leg	muscle
14	chr3:17053800-17068400	Weak transcription	Adipose Nuclei	Adipose
15	chr3:17053800-17086800	Weak transcription	Fetal Stomach	stomach
16	chr3:17055000-17066200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:17055000-17077000	Weak transcription	Fetal Brain Female	brain
18	chr3:17055200-17072000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:17055400-17070600	Weak transcription	Gastric	stomach
20	chr3:17055400-17074200	Weak transcription	Brain Anterior Caudate	brain
21	chr3:17055400-17088800	Weak transcription	Thymus	Thymus
22	chr3:17055600-17079800	Weak transcription	Small Intestine	intestine
23	chr3:17055800-17087800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr3:17056000-17060800	Strong transcription	Primary T cells from cord blood	blood
25	chr3:17056200-17061000	Strong transcription	GM12878-XiMat	blood
26	chr3:17056400-17061600	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr3:17057200-17062800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr3:17057200-17066800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr3:17057400-17062800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:17057400-17062800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr3:17057400-17064000	Weak transcription	Stomach Mucosa	stomach
32	chr3:17057400-17068400	Weak transcription	Liver	Liver
33	chr3:17057400-17076200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr3:17057600-17060800	Weak transcription	Dnd41	blood
35	chr3:17057600-17080600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr3:17058200-17062400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr3:17058200-17066000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:17058200-17074000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr3:17058400-17062400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr3:17058400-17064400	Weak transcription	Placenta	Placenta
41	chr3:17058600-17062600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr3:17058600-17062800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr3:17058600-17071600	Weak transcription	Fetal Heart	heart
44	chr3:17058600-17077000	Weak transcription	Right Ventricle	heart
45	chr3:17058600-17082400	Weak transcription	Fetal Intestine Large	intestine
46	chr3:17059400-17060400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
47	chr3:17059400-17063600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr3:17059600-17062600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr3:17059800-17073000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr3:17060000-17062400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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