Variant report

Variant	rs55942882
Chromosome Location	chr3:17017001-17017002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12054464	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233493	0.90[ASN][1000 genomes]
rs12233538	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12233541	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13073804	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13083189	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13096536	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1550518	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17042972	0.93[ASN][1000 genomes]
rs17200543	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17272740	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17272754	0.93[EUR][1000 genomes]
rs17272810	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17272817	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17272831	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28932173	0.87[ASN][1000 genomes]
rs34053933	0.90[EUR][1000 genomes]
rs34126040	0.93[EUR][1000 genomes]
rs34437014	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34824028	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35100600	0.85[AMR][1000 genomes]
rs35307172	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935970	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4290789	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56060350	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58855245	0.90[EUR][1000 genomes]
rs59256854	0.90[EUR][1000 genomes]
rs62246031	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247182	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6789069	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6796868	0.97[ASN][1000 genomes]
rs7616589	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7652293	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9815788	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834723	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9835432	0.91[EUR][1000 genomes]
rs9845137	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9858664	0.97[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17009200-17026600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:17014800-17019600	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr3:17014800-17033600	Weak transcription	Primary T cells from cord blood	blood
4	chr3:17014800-17038800	Weak transcription	Primary B cells from cord blood	blood
5	chr3:17015000-17017400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr3:17015000-17018000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:17015000-17019400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:17015400-17017400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr3:17015400-17017600	Enhancers	Left Ventricle	heart
10	chr3:17015600-17017400	Enhancers	Right Atrium	heart
11	chr3:17015600-17017600	Enhancers	Psoas Muscle	Psoas
12	chr3:17015600-17019000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:17015800-17017800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:17016000-17020000	Weak transcription	Aorta	Aorta
15	chr3:17016000-17020600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:17016200-17017400	Enhancers	Right Ventricle	heart
17	chr3:17016200-17017600	Enhancers	Adipose Nuclei	Adipose
18	chr3:17016200-17019800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr3:17016200-17027200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr3:17016400-17017200	Enhancers	Osteobl	bone
21	chr3:17016400-17017600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr3:17016400-17032200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr3:17016600-17017400	Weak transcription	Pancreas	Pancrea
24	chr3:17016600-17026600	Weak transcription	Fetal Heart	heart
25	chr3:17016800-17017200	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr3:17016800-17017400	Enhancers	Ovary	ovary
27	chr3:17017000-17028600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr3:17017000-17029800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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