Variant report

Variant	rs17272810
Chromosome Location	chr3:17078840-17078841
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17077235..17080133-chr3:17081662..17084090,3	K562	blood:
2	chr3:17077235..17079124-chr3:17082196..17084090,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11549706	0.86[CEU][hapmap];0.85[TSI][hapmap]
rs12054464	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12233493	0.87[ASN][1000 genomes]
rs12233538	0.81[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12233541	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13059760	0.92[CEU][hapmap]
rs13062572	1.00[ASW][hapmap];0.93[CEU][hapmap];0.84[TSI][hapmap];0.94[YRI][hapmap]
rs13066204	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs13073804	0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13083189	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13085309	0.93[CEU][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs13089569	0.86[CEU][hapmap];0.85[TSI][hapmap]
rs13096536	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1550518	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17042926	0.88[CHD][hapmap]
rs17200543	0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes]
rs17272740	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17272754	0.82[CEU][hapmap];1.00[CHD][hapmap];0.92[TSI][hapmap]
rs17272817	1.00[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17272831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28498854	0.95[EUR][1000 genomes]
rs28932173	0.83[ASN][1000 genomes]
rs34053933	0.86[EUR][1000 genomes]
rs34437014	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34824028	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35100600	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35307172	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3935970	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4290789	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55942882	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56060350	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58855245	0.86[EUR][1000 genomes]
rs59256854	0.86[EUR][1000 genomes]
rs62246031	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62247182	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6789069	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796868	0.88[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs71627166	0.86[EUR][1000 genomes]
rs7616589	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7652293	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7652874	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs9815788	0.82[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9834723	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9835432	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs9845137	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9858664	0.81[ASN][1000 genomes]
rs9876768	1.00[CEU][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.96[TSI][hapmap];0.94[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17272810	PLCL2	cis	multi-tissue	Pritchard

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17053600-17080600	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:17053800-17086800	Weak transcription	Fetal Stomach	stomach
3	chr3:17055400-17088800	Weak transcription	Thymus	Thymus
4	chr3:17055600-17079800	Weak transcription	Small Intestine	intestine
5	chr3:17055800-17087800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:17057600-17080600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:17058600-17082400	Weak transcription	Fetal Intestine Large	intestine
8	chr3:17060000-17082200	Weak transcription	Fetal Intestine Small	intestine
9	chr3:17060000-17088600	Weak transcription	Pancreas	Pancrea
10	chr3:17060200-17081000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr3:17065600-17081200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:17069400-17085600	Weak transcription	Aorta	Aorta
13	chr3:17069600-17080800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:17070000-17093600	Weak transcription	Fetal Lung	lung
15	chr3:17071400-17079800	Weak transcription	Lung	lung
16	chr3:17071400-17080600	Weak transcription	Gastric	stomach
17	chr3:17071800-17080600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr3:17072200-17079800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:17072800-17080200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr3:17072800-17080600	Weak transcription	Esophagus	oesophagus
21	chr3:17072800-17085600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr3:17073000-17080200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr3:17073000-17088800	Weak transcription	Right Atrium	heart
24	chr3:17073000-17093000	Weak transcription	Spleen	Spleen
25	chr3:17073200-17080600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr3:17073200-17085200	Weak transcription	Placenta	Placenta
27	chr3:17073200-17085400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr3:17074000-17084400	Weak transcription	Liver	Liver
29	chr3:17074400-17079800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr3:17074800-17080600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr3:17075000-17079800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr3:17075400-17080400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr3:17075800-17080200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr3:17075800-17080400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr3:17075800-17080600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr3:17075800-17081000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr3:17076400-17085600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr3:17076600-17086800	Weak transcription	Dnd41	blood
39	chr3:17076800-17085200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr3:17077000-17079800	Weak transcription	Primary B cells from cord blood	blood
41	chr3:17077000-17082000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr3:17077000-17086800	Weak transcription	Fetal Thymus	thymus
43	chr3:17077200-17079800	Weak transcription	Fetal Heart	heart
44	chr3:17077200-17080600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr3:17077200-17083800	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr3:17077400-17080600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr3:17077400-17080600	Weak transcription	Brain Substantia Nigra	brain
48	chr3:17077400-17080800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr3:17077400-17084200	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr3:17077400-17085600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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