Variant report

Variant	rs13059760
Chromosome Location	chr3:17118168-17118169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17110502..17112768-chr3:17117008..17119386,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11128818	0.85[EUR][1000 genomes]
rs11549706	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs13062572	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066204	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13073832	0.86[EUR][1000 genomes]
rs13077235	0.88[EUR][1000 genomes]
rs13085309	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13089569	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs13097797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17272810	0.92[CEU][hapmap]
rs17272831	0.92[CEU][hapmap]
rs34704046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34937985	0.82[EUR][1000 genomes]
rs35185988	0.88[EUR][1000 genomes]
rs35281010	0.89[EUR][1000 genomes]
rs35545382	0.85[EUR][1000 genomes]
rs36118680	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935970	0.92[CEU][hapmap]
rs62247257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6789069	0.85[CEU][hapmap]
rs71627166	1.00[AFR][1000 genomes]
rs7616589	0.92[CEU][hapmap]
rs7652293	0.92[CEU][hapmap]
rs7652874	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9834723	0.91[CEU][hapmap]
rs9845137	0.93[CEU][hapmap]
rs9876768	0.92[CEU][hapmap]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17089400-17135000	Weak transcription	Pancreas	Pancrea
2	chr3:17095400-17120600	Weak transcription	Aorta	Aorta
3	chr3:17095400-17120600	Weak transcription	Lung	lung
4	chr3:17097600-17120400	Weak transcription	Spleen	Spleen
5	chr3:17103400-17134400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr3:17106800-17118200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr3:17107000-17133400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:17107200-17126200	Weak transcription	Fetal Kidney	kidney
9	chr3:17107600-17122800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr3:17108200-17120600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:17108600-17118600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:17109800-17120800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:17110800-17132200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:17111400-17129400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:17111800-17130600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:17112000-17132000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr3:17112200-17118600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr3:17112200-17137400	Weak transcription	Brain Germinal Matrix	brain
19	chr3:17112400-17118400	Weak transcription	Right Atrium	heart
20	chr3:17112600-17118600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr3:17112600-17118600	Weak transcription	Fetal Heart	heart
22	chr3:17112600-17120600	Weak transcription	Gastric	stomach
23	chr3:17112600-17120600	Weak transcription	Ovary	ovary
24	chr3:17112600-17120800	Weak transcription	Adipose Nuclei	Adipose
25	chr3:17112600-17123000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:17112600-17124000	Weak transcription	Fetal Intestine Large	intestine
27	chr3:17112600-17124600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr3:17112600-17126000	Weak transcription	Fetal Brain Female	brain
29	chr3:17112600-17127800	Weak transcription	Fetal Lung	lung
30	chr3:17112600-17129600	Weak transcription	Brain Angular Gyrus	brain
31	chr3:17112600-17130200	Weak transcription	Brain Anterior Caudate	brain
32	chr3:17112600-17135800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr3:17112800-17118200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr3:17112800-17118400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr3:17112800-17118400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr3:17112800-17119600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr3:17112800-17119800	Weak transcription	Fetal Stomach	stomach
38	chr3:17112800-17131200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr3:17112800-17135200	Weak transcription	Fetal Brain Male	brain
40	chr3:17114400-17126800	Strong transcription	Primary B cells from cord blood	blood
41	chr3:17114400-17131600	Weak transcription	Colonic Mucosa	Colon
42	chr3:17115800-17118400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr3:17116000-17119600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr3:17116000-17121200	Strong transcription	Placenta	Placenta
45	chr3:17116200-17120800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr3:17116400-17118400	Weak transcription	Primary B cells from peripheral blood	blood
47	chr3:17116400-17119200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr3:17116400-17122200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr3:17116400-17122400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr3:17116400-17122800	Weak transcription	Fetal Thymus	thymus

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