Variant report

Variant	rs9834723
Chromosome Location	chr3:17073965-17073966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17067604..17070878-chr3:17071956..17074432,3	K562	blood:
2	chr3:16642885..16643423-chr3:17073610..17074546,2	K562	blood:
3	chr3:16642821..16643372-chr3:17073567..17074539,2	MCF-7	breast:
4	chr3:16642690..16643585-chr3:17073637..17074419,4	MCF-7	breast:
5	chr3:17061938..17064281-chr3:17072645..17075363,2	K562	blood:
6	chr3:16875499..16876432-chr3:17073651..17074550,5	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11549706	0.85[CEU][hapmap]
rs12054464	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12233493	0.97[ASN][1000 genomes]
rs12233538	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233541	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13059760	0.91[CEU][hapmap]
rs13062572	0.92[CEU][hapmap]
rs13066204	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs13073804	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13083189	1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085309	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs13089569	0.85[CEU][hapmap]
rs13096536	1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1550518	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17042972	0.87[ASN][1000 genomes]
rs17200543	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17272740	0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17272754	0.80[CEU][hapmap]
rs17272810	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17272817	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17272831	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28498854	0.95[EUR][1000 genomes]
rs28932173	0.93[ASN][1000 genomes]
rs34053933	0.86[EUR][1000 genomes]
rs34437014	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34824028	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35100600	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35307172	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3935970	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4290789	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55942882	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56060350	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58855245	0.86[EUR][1000 genomes]
rs59256854	0.86[EUR][1000 genomes]
rs62246031	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62247182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6789069	0.93[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6796868	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs71627166	0.86[EUR][1000 genomes]
rs7616589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7652874	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs9815788	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9835432	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs9845137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9858664	0.90[ASN][1000 genomes]
rs9876768	1.00[CEU][hapmap];0.94[EUR][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17051600-17075000	Weak transcription	Fetal Brain Male	brain
2	chr3:17053600-17076200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:17053600-17080600	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:17053800-17086800	Weak transcription	Fetal Stomach	stomach
5	chr3:17055000-17077000	Weak transcription	Fetal Brain Female	brain
6	chr3:17055400-17074200	Weak transcription	Brain Anterior Caudate	brain
7	chr3:17055400-17088800	Weak transcription	Thymus	Thymus
8	chr3:17055600-17079800	Weak transcription	Small Intestine	intestine
9	chr3:17055800-17087800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:17057400-17076200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr3:17057600-17080600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:17058200-17074000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr3:17058600-17077000	Weak transcription	Right Ventricle	heart
14	chr3:17058600-17082400	Weak transcription	Fetal Intestine Large	intestine
15	chr3:17060000-17074600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:17060000-17082200	Weak transcription	Fetal Intestine Small	intestine
17	chr3:17060000-17088600	Weak transcription	Pancreas	Pancrea
18	chr3:17060200-17081000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr3:17065600-17081200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr3:17066600-17075600	Weak transcription	Left Ventricle	heart
21	chr3:17069400-17085600	Weak transcription	Aorta	Aorta
22	chr3:17069600-17080800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:17070000-17093600	Weak transcription	Fetal Lung	lung
24	chr3:17071000-17074400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:17071400-17074200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:17071400-17075000	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr3:17071400-17079800	Weak transcription	Lung	lung
28	chr3:17071400-17080600	Weak transcription	Gastric	stomach
29	chr3:17071600-17075600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr3:17071800-17080600	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr3:17072200-17079800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr3:17072400-17074000	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr3:17072600-17074400	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr3:17072600-17075000	Weak transcription	Primary hematopoietic stem cells	blood
35	chr3:17072800-17074000	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr3:17072800-17076200	Weak transcription	Primary B cells from peripheral blood	blood
37	chr3:17072800-17080200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr3:17072800-17080600	Weak transcription	Esophagus	oesophagus
39	chr3:17072800-17085600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr3:17073000-17074000	Weak transcription	Fetal Heart	heart
41	chr3:17073000-17074000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr3:17073000-17075000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr3:17073000-17075200	Weak transcription	Fetal Thymus	thymus
44	chr3:17073000-17077200	Weak transcription	Ovary	ovary
45	chr3:17073000-17078400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr3:17073000-17080200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr3:17073000-17088800	Weak transcription	Right Atrium	heart
48	chr3:17073000-17093000	Weak transcription	Spleen	Spleen
49	chr3:17073200-17074000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr3:17073200-17074000	Enhancers	Liver	Liver

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