Variant report

Variant	rs34437014
Chromosome Location	chr3:17014906-17014907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12054464	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233493	0.90[ASN][1000 genomes]
rs12233538	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12233541	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13073804	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13083189	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13096536	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1550518	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17042972	0.93[ASN][1000 genomes]
rs17200543	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17272740	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17272754	0.92[EUR][1000 genomes]
rs17272810	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17272817	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17272831	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28498854	0.80[EUR][1000 genomes]
rs28932173	0.87[ASN][1000 genomes]
rs34053933	0.91[EUR][1000 genomes]
rs34126040	0.93[EUR][1000 genomes]
rs34824028	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35100600	0.85[AMR][1000 genomes]
rs35307172	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935970	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4290789	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55942882	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56060350	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58855245	0.91[EUR][1000 genomes]
rs59256854	0.91[EUR][1000 genomes]
rs62246031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247182	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6789069	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6796868	0.97[ASN][1000 genomes]
rs7616589	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7652293	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9815788	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834723	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9835432	0.91[EUR][1000 genomes]
rs9845137	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9858664	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv980048	chr3:16995372-17016178	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:16987400-17015600	Weak transcription	Aorta	Aorta
2	chr3:17005400-17015000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:17009200-17026600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr3:17009800-17015000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:17010400-17015600	Weak transcription	Right Ventricle	heart
6	chr3:17011000-17015000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr3:17013400-17016200	Weak transcription	Adipose Nuclei	Adipose
8	chr3:17013800-17016200	Weak transcription	Fetal Heart	heart
9	chr3:17014400-17016000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
10	chr3:17014600-17015400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr3:17014600-17015400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr3:17014600-17016600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr3:17014800-17019600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr3:17014800-17033600	Weak transcription	Primary T cells from cord blood	blood
15	chr3:17014800-17038800	Weak transcription	Primary B cells from cord blood	blood

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