Variant report

Variant	rs35307172
Chromosome Location	chr3:17019910-17019911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:16999677..17001737-chr3:17018977..17021137,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12054464	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233493	0.90[ASN][1000 genomes]
rs12233538	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12233541	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13073804	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13083189	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13096536	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1550518	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17042972	0.93[ASN][1000 genomes]
rs17200543	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17272740	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17272754	0.93[EUR][1000 genomes]
rs17272810	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17272817	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17272831	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28932173	0.87[ASN][1000 genomes]
rs34053933	0.90[EUR][1000 genomes]
rs34126040	0.93[EUR][1000 genomes]
rs34437014	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34824028	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35100600	0.90[AMR][1000 genomes]
rs3935970	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4290789	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55942882	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56060350	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58855245	0.90[EUR][1000 genomes]
rs59256854	0.90[EUR][1000 genomes]
rs62246031	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247182	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6789069	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6796868	0.97[ASN][1000 genomes]
rs7616589	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7652293	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9815788	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834723	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9835432	0.91[EUR][1000 genomes]
rs9845137	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9858664	0.97[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17009200-17026600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:17014800-17033600	Weak transcription	Primary T cells from cord blood	blood
3	chr3:17014800-17038800	Weak transcription	Primary B cells from cord blood	blood
4	chr3:17016000-17020000	Weak transcription	Aorta	Aorta
5	chr3:17016000-17020600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:17016200-17027200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:17016400-17032200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr3:17016600-17026600	Weak transcription	Fetal Heart	heart
9	chr3:17017000-17028600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:17017000-17029800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr3:17017400-17023200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr3:17017400-17026600	Weak transcription	Right Ventricle	heart
13	chr3:17017400-17027200	Weak transcription	Ovary	ovary
14	chr3:17017400-17027400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr3:17017400-17027400	Weak transcription	Right Atrium	heart
16	chr3:17017600-17020000	Weak transcription	Adipose Nuclei	Adipose
17	chr3:17017600-17020000	Weak transcription	Pancreas	Pancrea
18	chr3:17017600-17021400	Weak transcription	Left Ventricle	heart
19	chr3:17017600-17022000	Weak transcription	Lung	lung
20	chr3:17017600-17023200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr3:17018000-17023200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr3:17018400-17021600	Weak transcription	Dnd41	blood
23	chr3:17018800-17020200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:17019000-17029800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:17019200-17020400	Enhancers	Psoas Muscle	Psoas
26	chr3:17019200-17020400	Enhancers	Osteobl	bone
27	chr3:17019400-17020200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:17019400-17023200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr3:17019400-17027200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr3:17019600-17020000	Enhancers	Muscle Satellite Cultured Cells	--
31	chr3:17019600-17020200	Enhancers	Hela-S3	cervix
32	chr3:17019600-17020400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:17019600-17020600	Enhancers	Liver	Liver
34	chr3:17019600-17022800	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr3:17019800-17020400	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr3:17019800-17020600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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