Variant report

Variant	rs17042972
Chromosome Location	chr3:17036327-17036328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:16938783..16939655-chr3:17036222..17037147,3	MCF-7	breast:
2	chr3:17035509..17037712-chr3:17038377..17040879,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12054464	0.93[ASN][1000 genomes]
rs12233493	0.84[ASN][1000 genomes]
rs12233538	0.87[ASN][1000 genomes]
rs12233541	0.87[ASN][1000 genomes]
rs13073804	0.93[ASN][1000 genomes]
rs13083189	0.87[ASN][1000 genomes]
rs1550518	0.93[ASN][1000 genomes]
rs17200543	0.81[ASN][1000 genomes]
rs17272740	0.93[ASN][1000 genomes]
rs28932173	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34437014	0.93[ASN][1000 genomes]
rs34824028	0.87[ASN][1000 genomes]
rs35307172	0.93[ASN][1000 genomes]
rs3935970	0.87[ASN][1000 genomes]
rs4290789	0.87[ASN][1000 genomes]
rs55942882	0.93[ASN][1000 genomes]
rs56060350	0.81[ASN][1000 genomes]
rs62246031	0.93[ASN][1000 genomes]
rs62247182	0.87[ASN][1000 genomes]
rs6796868	0.90[ASN][1000 genomes]
rs7616589	0.87[ASN][1000 genomes]
rs7652293	0.81[ASN][1000 genomes]
rs9815788	0.93[ASN][1000 genomes]
rs9834723	0.87[ASN][1000 genomes]
rs9845137	0.87[ASN][1000 genomes]
rs9858664	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963480	chr3:17031904-17038082	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17014800-17038800	Weak transcription	Primary B cells from cord blood	blood
2	chr3:17026800-17041200	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr3:17028400-17039600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr3:17029400-17042200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:17030200-17039200	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr3:17031200-17038200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr3:17031800-17041200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr3:17032600-17036400	Weak transcription	Fetal Intestine Small	intestine
9	chr3:17032600-17037600	Weak transcription	Lung	lung
10	chr3:17032800-17036400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:17032800-17036600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr3:17033400-17036400	Weak transcription	Thymus	Thymus
13	chr3:17033400-17040200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr3:17033600-17038200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr3:17033800-17037200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr3:17034000-17038200	Enhancers	Stomach Mucosa	stomach
17	chr3:17034200-17037800	Enhancers	Liver	Liver
18	chr3:17034400-17037600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr3:17034400-17044800	Weak transcription	Aorta	Aorta
20	chr3:17034600-17037600	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr3:17034600-17037600	Enhancers	A549	lung
22	chr3:17034800-17037600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr3:17034800-17039600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr3:17035000-17036400	Weak transcription	Right Ventricle	heart
25	chr3:17035000-17036600	Weak transcription	Adipose Nuclei	Adipose
26	chr3:17035000-17039400	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr3:17035000-17047200	Weak transcription	Ovary	ovary
28	chr3:17035400-17037400	Enhancers	Fetal Brain Female	brain
29	chr3:17035600-17037000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:17035600-17039800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:17036000-17036600	Weak transcription	Brain Anterior Caudate	brain
32	chr3:17036000-17037600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:17036000-17038000	Enhancers	Fetal Heart	heart
34	chr3:17036000-17041600	Enhancers	Primary T cells from cord blood	blood
35	chr3:17036200-17036400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
36	chr3:17036200-17036400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr3:17036200-17036400	Enhancers	Esophagus	oesophagus
38	chr3:17036200-17036600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
39	chr3:17036200-17036600	Enhancers	Rectal Mucosa Donor 29	rectum
40	chr3:17036200-17036800	Enhancers	Small Intestine	intestine
41	chr3:17036200-17037400	Flanking Active TSS	Hela-S3	cervix
42	chr3:17036200-17037800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
43	chr3:17036200-17037800	Enhancers	Primary B cells from peripheral blood	blood
44	chr3:17036200-17037800	Enhancers	Fetal Muscle Leg	muscle
45	chr3:17036200-17037800	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr3:17036200-17037800	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr3:17036200-17037800	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr3:17036200-17038000	Enhancers	Fetal Thymus	thymus
49	chr3:17036200-17038000	Enhancers	Gastric	stomach
50	chr3:17036200-17038000	Enhancers	Left Ventricle	heart

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